Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YFQ entry

There are 3 chains in PDB entry 7YFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 U 1 C 24
C
 U 8 A 23
A
 GLN 230LEU 987
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7YFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
267 278Right-handed alpha
Helix 2
AA2
A
278 283Right-handed alpha
Helix 3
AA3
A
329 347Right-handed alpha
Helix 4
AA4
A
402 410Right-handed alpha
Helix 5
AA5
A
423 429Right-handed alpha
Helix 6
AA6
A
458 460Right-handed 310
Helix 7
AA7
A
465 474Right-handed alpha
Helix 8
AA8
A
521 527Right-handed alpha
Helix 9
AA9
A
527 539Right-handed alpha
Helix 10
AB1
A
541 559Right-handed alpha
Helix 11
AB2
A
561 570Right-handed alpha
Helix 12
AB3
A
605 612Right-handed alpha
Helix 13
AB4
A
628 631Right-handed 310
Helix 14
AB5
A
632 650Right-handed alpha
Helix 15
AB6
A
665 677Right-handed alpha
Helix 16
AB7
A
692 705Right-handed alpha
Helix 17
AB8
A
724 739Right-handed alpha
Helix 18
AB9
A
797 819Right-handed alpha
Helix 19
AC1
A
837 843Right-handed alpha
Helix 20
AC2
A
843 851Right-handed alpha
Helix 21
AC3
A
930 942Right-handed alpha
Helix 22
AC4
A
955 971Right-handed alpha
Helix 23
AC5
A
977 981Right-handed 310
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There are 9 sheets in PDB entry 7YFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
786 789first strand
Strand 2
A
772 778anti-parallel
Strand 3
A
754 762anti-parallel
Strand 4
A
824 829parallel
Strand 5
A
862 869parallel
Strand 6
A
918 925anti-parallel
Strand 7
A
902 906anti-parallel
Strand 8
A
891 893anti-parallel
Strand 9
A
579 584anti-parallel
Strand 10
A
236 242anti-parallel
Strand 11
A
876 880anti-parallel
Strand 12
A
883 885anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
370 383anti-parallel
Strand 3
A
363 364anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
370 383anti-parallel
Strand 3
A
386 399anti-parallel
Strand 4
A
244 249anti-parallel
Strand 5
A
571 573anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
255 258anti-parallel
Strand 3
A
322 324anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
438 439anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
485 487anti-parallel
Strand 3
A
508 510anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
462 464anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 598first strand
Strand 2
A
589 592anti-parallel
Strand 3
A
746 747anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 660first strand
Strand 2
A
623 627parallel
Strand 3
A
683 688parallel
Strand 4
A
711 715parallel
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