Analysis of interatomic Contacts of Structural Units in PDB entry:
7YFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YFX entry

There are 2 chains in PDB entry 7YFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 215LEU 973
B
 U 1 U 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7YFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
253 264Right-handed alpha
Helix 2
AA2
A
264 269Right-handed alpha
Helix 3
AA3
A
318 334Right-handed alpha
Helix 4
AA4
A
389 401Right-handed alpha
Helix 5
AA5
A
405 414Right-handed alpha
Helix 6
AA6
A
452 460Right-handed alpha
Helix 7
AA7
A
504 510Right-handed alpha
Helix 8
AA8
A
510 522Right-handed alpha
Helix 9
AA9
A
524 542Right-handed alpha
Helix 10
AB1
A
542 553Right-handed alpha
Helix 11
AB2
A
588 595Right-handed alpha
Helix 12
AB3
A
614 633Right-handed alpha
Helix 13
AB4
A
648 663Right-handed alpha
Helix 14
AB5
A
677 690Right-handed alpha
Helix 15
AB6
A
701 706Right-handed alpha
Helix 16
AB7
A
709 725Right-handed alpha
Helix 17
AB8
A
783 804Right-handed alpha
Helix 18
AB9
A
821 828Right-handed alpha
Helix 19
AC1
A
828 835Right-handed alpha
Helix 20
AC2
A
836 839Right-handed 310
Helix 21
AC3
A
916 928Right-handed alpha
Helix 22
AC4
A
941 957Right-handed alpha
Helix 23
AC5
A
964 969Right-handed 310
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There are 9 sheets in PDB entry 7YFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
771 777first strand
Strand 2
A
757 763anti-parallel
Strand 3
A
739 747anti-parallel
Strand 4
A
809 814parallel
Strand 5
A
846 853parallel
Strand 6
A
904 911anti-parallel
Strand 7
A
887 892anti-parallel
Strand 8
A
875 877anti-parallel
Strand 9
A
562 567anti-parallel
Strand 10
A
222 228anti-parallel
Strand 11
A
860 863anti-parallel
Strand 12
A
868 869anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
357 369anti-parallel
Strand 3
A
350 352anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
357 369anti-parallel
Strand 3
A
374 386anti-parallel
Strand 4
A
230 235anti-parallel
Strand 5
A
554 556anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
240 247anti-parallel
Strand 4
A
301 312anti-parallel
Strand 5
A
289 294anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
417 420anti-parallel
Strand 3
A
499 500anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 433first strand
Strand 2
A
471 474anti-parallel
Strand 3
A
491 493anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
450 451anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 581first strand
Strand 2
A
572 574anti-parallel
Strand 3
A
731 732anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 644first strand
Strand 2
A
607 611parallel
Strand 3
A
669 673parallel
Strand 4
A
696 700parallel
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