Analysis of interatomic Contacts of Structural Units in PDB entry:
7YG2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YG2 entry

There are 12 chains in PDB entry 7YG2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	LYS 161	LEU 457
A	ILE 345	THR 574
B	ILE 345	ALA 572
C	ILE 345	THR 574
D	ILE 345	MET 568
E	ILE 345	MET 568
F	ILE 345	MET 568
G	ILE 345	MET 568
H	ILE 345	MET 568
K	ILE 345	SER 569
L	ILE 345	CYS 575
J	GLU 3	ASP 136

There are 56 helices in PDB entry 7YG2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	164	171	Right-handed alpha
Helix 2	AA2	M	205	210	Right-handed alpha
Helix 3	AA3	M	216	223	Right-handed alpha
Helix 4	AA4	M	228	249	Right-handed alpha
Helix 5	AA5	M	252	272	Right-handed alpha
Helix 6	AA6	M	279	297	Right-handed alpha
Helix 7	AA7	M	305	313	Right-handed alpha
Helix 8	AA8	M	313	330	Right-handed alpha
Helix 9	AA9	M	344	373	Right-handed alpha
Helix 10	AB1	M	390	421	Right-handed alpha
Helix 11	AB2	M	432	440	Right-handed alpha
Helix 12	AB3	M	451	456	Right-handed alpha
Helix 13	AB4	A	353	359	Right-handed alpha
Helix 14	AB5	A	414	421	Right-handed alpha
Helix 15	AB6	A	460	466	Right-handed alpha
Helix 16	AB7	A	525	529	Right-handed alpha
Helix 17	AB8	B	353	358	Right-handed alpha
Helix 18	AB9	B	384	388	Right-handed 310
Helix 19	AC1	B	414	420	Right-handed alpha
Helix 20	AC2	B	460	467	Right-handed alpha
Helix 21	AC3	B	524	531	Right-handed alpha
Helix 22	AC4	C	353	361	Right-handed alpha
Helix 23	AC5	C	414	420	Right-handed alpha
Helix 24	AC6	C	460	466	Right-handed alpha
Helix 25	AC7	C	524	530	Right-handed alpha
Helix 26	AC8	D	353	360	Right-handed alpha
Helix 27	AC9	D	414	420	Right-handed alpha
Helix 28	AD1	D	460	467	Right-handed alpha
Helix 29	AD2	D	524	531	Right-handed alpha
Helix 30	AD3	E	353	360	Right-handed alpha
Helix 31	AD4	E	415	421	Right-handed alpha
Helix 32	AD5	E	460	467	Right-handed alpha
Helix 33	AD6	E	524	531	Right-handed alpha
Helix 34	AD7	E	553	558	Right-handed alpha
Helix 35	AD8	F	353	361	Right-handed alpha
Helix 36	AD9	F	415	420	Right-handed alpha
Helix 37	AE1	F	460	466	Right-handed alpha
Helix 38	AE2	F	524	530	Right-handed alpha
Helix 39	AE3	G	353	361	Right-handed alpha
Helix 40	AE4	G	414	419	Right-handed alpha
Helix 41	AE5	G	460	466	Right-handed alpha
Helix 42	AE6	G	525	529	Right-handed alpha
Helix 43	AE7	G	553	558	Right-handed alpha
Helix 44	AE8	H	353	360	Right-handed alpha
Helix 45	AE9	H	414	421	Right-handed alpha
Helix 46	AF1	H	460	466	Right-handed alpha
Helix 47	AF2	H	524	530	Right-handed alpha
Helix 48	AF3	K	353	361	Right-handed alpha
Helix 49	AF4	K	414	421	Right-handed alpha
Helix 50	AF5	K	460	467	Right-handed alpha
Helix 51	AF6	K	525	531	Right-handed alpha
Helix 52	AF7	L	355	360	Right-handed alpha
Helix 53	AF8	L	414	420	Right-handed alpha
Helix 54	AF9	L	460	467	Right-handed alpha
Helix 55	AG1	L	524	530	Right-handed alpha
Helix 56	AG2	J	64	69	Right-handed alpha

There are 53 sheets in PDB entry 7YG2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	366	370	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	412	413	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	381	383	anti-parallel
Strand 3	A	425	427	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	B	561	563	parallel
Strand 3	C	561	562	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	A	565	569	parallel
Strand 3	J	59	63	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	368	370	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	383	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	437	441	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	456	first strand
Strand 2	B	470	479	anti-parallel
Strand 3	B	515	523	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	456	first strand
Strand 2	B	470	479	anti-parallel
Strand 3	B	515	523	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	547	552	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	384	first strand
Strand 2	C	424	429	anti-parallel
Strand 3	C	437	441	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	470	479	anti-parallel
Strand 3	C	519	523	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	470	479	anti-parallel
Strand 3	C	515	517	anti-parallel
Strand 4	C	506	507	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	485	490	anti-parallel
Strand 3	C	535	539	anti-parallel
Strand 4	C	547	550	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	567	first strand
Strand 2	D	565	567	parallel
Strand 3	E	566	567	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	428	first strand
Strand 2	D	437	441	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	457	first strand
Strand 2	D	470	479	anti-parallel
Strand 3	D	519	523	anti-parallel
Strand 4	D	500	502	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	457	first strand
Strand 2	D	470	479	anti-parallel
Strand 3	D	515	517	anti-parallel
Strand 4	D	506	507	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	490	first strand
Strand 2	D	493	494	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	539	first strand
Strand 2	D	547	551	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	424	427	first strand
Strand 2	E	438	441	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	477	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	500	502	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	477	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	506	507	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	493	494	first strand
Strand 2	E	485	490	anti-parallel
Strand 3	E	536	539	anti-parallel
Strand 4	E	547	550	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	365	first strand
Strand 2	F	411	413	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	389	391	first strand
Strand 2	F	380	384	anti-parallel
Strand 3	F	424	428	anti-parallel
Strand 4	F	440	441	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	470	477	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	500	502	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	470	477	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	506	507	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	485	490	anti-parallel
Strand 3	F	535	539	anti-parallel
Strand 4	F	547	550	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	565	567	first strand
Strand 2	G	562	567	parallel
Strand 3	H	562	567	parallel
Strand 4	K	565	567	parallel
Strand 5	L	564	568	parallel
Strand 6	J	33	41	parallel
Strand 7	J	17	21	anti-parallel
Strand 8	J	5	8	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	349	first strand
Strand 2	G	367	369	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	379	383	first strand
Strand 2	G	423	429	anti-parallel
Strand 3	G	437	442	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	455	457	first strand
Strand 2	G	469	479	anti-parallel
Strand 3	G	515	524	anti-parallel
Strand 4	G	501	502	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	455	457	first strand
Strand 2	G	469	479	anti-parallel
Strand 3	G	515	524	anti-parallel
Strand 4	G	506	507	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	493	494	first strand
Strand 2	G	485	490	anti-parallel
Strand 3	G	535	539	anti-parallel
Strand 4	G	547	550	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	346	349	first strand
Strand 2	H	367	370	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	379	383	first strand
Strand 2	H	424	429	anti-parallel
Strand 3	H	437	441	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	457	first strand
Strand 2	H	470	479	anti-parallel
Strand 3	H	515	523	anti-parallel
Strand 4	H	500	502	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	457	first strand
Strand 2	H	470	479	anti-parallel
Strand 3	H	515	523	anti-parallel
Strand 4	H	506	507	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	493	494	first strand
Strand 2	H	485	490	anti-parallel
Strand 3	H	535	539	anti-parallel
Strand 4	H	547	550	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	348	350	first strand
Strand 2	K	366	368	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	379	383	first strand
Strand 2	K	425	429	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	469	477	anti-parallel
Strand 3	K	515	524	anti-parallel
Strand 4	K	500	502	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	469	477	anti-parallel
Strand 3	K	515	524	anti-parallel
Strand 4	K	506	507	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	493	494	first strand
Strand 2	K	485	490	anti-parallel
Strand 3	K	535	539	anti-parallel
Strand 4	K	547	548	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	381	383	first strand
Strand 2	L	424	427	anti-parallel
Strand 3	L	440	441	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	473	479	anti-parallel
Strand 3	L	515	521	anti-parallel
Strand 4	L	500	502	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	473	479	anti-parallel
Strand 3	L	515	521	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	485	489	first strand
Strand 2	L	534	539	anti-parallel
Strand 3	L	548	552	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	116	first strand
Strand 2	J	121	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YG2

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YG2