Analysis of interatomic Contacts of Structural Units in PDB entry:
7YG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YG5 entry

There are 3 chains in PDB entry 7YG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 76	ALA 1871
B	PRO 227	THR 412
D	PHE 27	GLY 1072

There are106 helices in PDB entry 7YG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	109	Right-handed alpha
Helix 2	AA2	A	118	125	Right-handed alpha
Helix 3	AA3	A	127	145	Right-handed alpha
Helix 4	AA4	A	158	175	Right-handed alpha
Helix 5	AA5	A	177	181	Right-handed 310
Helix 6	AA6	A	189	197	Right-handed 310
Helix 7	AA7	A	198	204	Right-handed alpha
Helix 8	AA8	A	204	218	Right-handed alpha
Helix 9	AA9	A	219	222	Right-handed 310
Helix 10	AB1	A	223	243	Right-handed alpha
Helix 11	AB2	A	297	307	Right-handed alpha
Helix 12	AB3	A	310	323	Right-handed alpha
Helix 13	AB4	A	327	340	Right-handed alpha
Helix 14	AB5	A	340	358	Right-handed alpha
Helix 15	AB6	A	360	385	Right-handed alpha
Helix 16	AB7	A	461	465	Right-handed alpha
Helix 17	AB8	A	467	473	Right-handed alpha
Helix 18	AB9	A	475	493	Right-handed alpha
Helix 19	AC1	A	501	528	Right-handed alpha
Helix 20	AC2	A	538	560	Right-handed alpha
Helix 21	AC3	A	569	583	Right-handed 310
Helix 22	AC4	A	585	599	Right-handed alpha
Helix 23	AC5	A	600	626	Right-handed alpha
Helix 24	AC6	A	642	655	Right-handed alpha
Helix 25	AC7	A	658	670	Right-handed alpha
Helix 26	AC8	A	676	682	Right-handed 310
Helix 27	AC9	A	696	713	Right-handed alpha
Helix 28	AD1	A	723	728	Right-handed alpha
Helix 29	AD2	A	776	788	Right-handed alpha
Helix 30	AD3	A	1146	1151	Right-handed 310
Helix 31	AD4	A	1157	1172	Right-handed alpha
Helix 32	AD5	A	1180	1209	Right-handed alpha
Helix 33	AD6	A	1223	1242	Right-handed alpha
Helix 34	AD7	A	1250	1258	Right-handed alpha
Helix 35	AD8	A	1259	1266	Right-handed 310
Helix 36	AD9	A	1267	1272	Right-handed alpha
Helix 37	AE1	A	1272	1289	Right-handed alpha
Helix 38	AE2	A	1292	1312	Right-handed alpha
Helix 39	AE3	A	1357	1370	Right-handed alpha
Helix 40	AE4	A	1373	1383	Right-handed alpha
Helix 41	AE5	A	1396	1400	Right-handed 310
Helix 42	AE6	A	1401	1410	Right-handed alpha
Helix 43	AE7	A	1412	1425	Right-handed alpha
Helix 44	AE8	A	1433	1438	Right-handed alpha
Helix 45	AE9	A	1441	1447	Right-handed alpha
Helix 46	AF1	A	1466	1469	Right-handed 310
Helix 47	AF2	A	1470	1476	Right-handed alpha
Helix 48	AF3	A	1480	1495	Right-handed alpha
Helix 49	AF4	A	1504	1526	Right-handed alpha
Helix 50	AF5	A	1528	1533	Right-handed alpha
Helix 51	AF6	A	1533	1538	Right-handed alpha
Helix 52	AF7	A	1542	1561	Right-handed alpha
Helix 53	AF8	A	1574	1581	Right-handed alpha
Helix 54	AF9	A	1584	1589	Right-handed alpha
Helix 55	AG1	A	1592	1606	Right-handed alpha
Helix 56	AG2	A	1609	1630	Right-handed alpha
Helix 57	AG3	A	1648	1661	Right-handed alpha
Helix 58	AG4	A	1664	1672	Right-handed alpha
Helix 59	AG5	A	1698	1723	Right-handed alpha
Helix 60	AG6	A	1725	1730	Right-handed alpha
Helix 61	AG7	A	1737	1742	Right-handed alpha
Helix 62	AG8	A	1742	1752	Right-handed alpha
Helix 63	AG9	A	1761	1768	Right-handed alpha
Helix 64	AH1	A	1783	1791	Right-handed alpha
Helix 65	AH2	A	1804	1818	Right-handed alpha
Helix 66	AH3	A	1824	1843	Right-handed alpha
Helix 67	AH4	A	1847	1855	Right-handed alpha
Helix 68	AH5	B	242	260	Right-handed alpha
Helix 69	AH6	B	272	276	Right-handed 310
Helix 70	AH7	B	303	314	Right-handed alpha
Helix 71	AH8	B	329	333	Right-handed 310
Helix 72	AH9	B	348	359	Right-handed alpha
Helix 73	AI1	B	361	365	Right-handed 310
Helix 74	AI2	B	366	379	Right-handed alpha
Helix 75	AI3	B	380	385	Right-handed 310
Helix 76	AI4	B	393	412	Right-handed alpha
Helix 77	AI5	D	29	52	Right-handed alpha
Helix 78	AI6	D	53	64	Right-handed alpha
Helix 79	AI7	D	74	110	Right-handed alpha
Helix 80	AI8	D	134	138	Right-handed 310
Helix 81	AI9	D	176	186	Right-handed alpha
Helix 82	AJ1	D	188	200	Right-handed alpha
Helix 83	AJ2	D	237	240	Right-handed 310
Helix 84	AJ3	D	241	248	Right-handed alpha
Helix 85	AJ4	D	261	265	Right-handed 310
Helix 86	AJ5	D	266	281	Right-handed alpha
Helix 87	AJ6	D	311	323	Right-handed alpha
Helix 88	AJ7	D	332	344	Right-handed alpha
Helix 89	AJ8	D	369	376	Right-handed alpha
Helix 90	AJ9	D	396	406	Right-handed alpha
Helix 91	AK1	D	418	431	Right-handed alpha
Helix 92	AK2	D	431	437	Right-handed alpha
Helix 93	AK3	D	494	499	Right-handed alpha
Helix 94	AK4	D	568	581	Right-handed alpha
Helix 95	AK5	D	639	646	Right-handed alpha
Helix 96	AK6	D	647	649	Right-handed 310
Helix 97	AK7	D	675	689	Right-handed alpha
Helix 98	AK8	D	690	694	Right-handed 310
Helix 99	AK9	D	698	719	Right-handed alpha
Helix 100	AL1	D	747	752	Right-handed 310
Helix 101	AL2	D	757	760	Right-handed 310
Helix 102	AL3	D	761	770	Right-handed alpha
Helix 103	AL4	D	817	826	Right-handed alpha
Helix 104	AL5	D	874	878	Right-handed 310
Helix 105	AL6	D	879	890	Right-handed alpha
Helix 106	AL7	D	1042	1047	Right-handed alpha

There are 17 sheets in PDB entry 7YG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	253	first strand
Strand 2	A	277	281	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1316	1318	first strand
Strand 2	A	1348	1350	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1332	1335	first strand
Strand 2	A	1342	1345	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	235	first strand
Strand 2	B	340	344	parallel
Strand 3	B	387	389	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	268	first strand
Strand 2	B	318	322	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	72	first strand
Strand 2	D	629	633	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	144	first strand
Strand 2	D	123	126	parallel
Strand 3	D	165	167	parallel
Strand 4	D	215	217	anti-parallel
Strand 5	D	206	210	anti-parallel
Strand 6	D	484	493	anti-parallel
Strand 7	D	458	467	anti-parallel
Strand 8	D	445	446	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	144	first strand
Strand 2	D	123	126	parallel
Strand 3	D	165	167	parallel
Strand 4	D	215	217	anti-parallel
Strand 5	D	206	210	anti-parallel
Strand 6	D	484	493	anti-parallel
Strand 7	D	458	467	anti-parallel
Strand 8	D	450	451	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	158	159	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	256	259	parallel
Strand 4	D	357	362	parallel
Strand 5	D	383	389	parallel
Strand 6	D	409	413	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	289	first strand
Strand 2	D	308	309	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	511	515	anti-parallel
Strand 3	D	618	624	anti-parallel
Strand 4	D	605	611	anti-parallel
Strand 5	D	584	588	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	591	593	first strand
Strand 2	D	600	602	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	729	736	first strand
Strand 2	D	810	816	anti-parallel
Strand 3	D	792	797	anti-parallel
Strand 4	D	774	776	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	800	802	first strand
Strand 2	D	805	807	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	861	862	first strand
Strand 2	D	849	854	anti-parallel
Strand 3	D	1013	1018	anti-parallel
Strand 4	D	999	1007	anti-parallel
Strand 5	D	989	996	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	904	first strand
Strand 2	D	972	983	anti-parallel
Strand 3	D	1036	1037	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YG5