Analysis of interatomic Contacts of Structural Units in PDB entry:
7YG6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YG6 entry

There are 2 chains in PDB entry 7YG6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 U 1 C 24
A
 GLN 230LEU 987
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7YG6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
250 254Right-handed 310
Helix 2
AA2
A
267 283Right-handed alpha
Helix 3
AA3
A
331 347Right-handed alpha
Helix 4
AA4
A
402 411Right-handed alpha
Helix 5
AA5
A
423 429Right-handed alpha
Helix 6
AA6
A
464 474Right-handed alpha
Helix 7
AA7
A
511 513Right-handed 310
Helix 8
AA8
A
521 527Right-handed alpha
Helix 9
AA9
A
527 539Right-handed alpha
Helix 10
AB1
A
541 557Right-handed alpha
Helix 11
AB2
A
559 569Right-handed alpha
Helix 12
AB3
A
605 611Right-handed alpha
Helix 13
AB4
A
631 646Right-handed alpha
Helix 14
AB5
A
647 650Right-handed 310
Helix 15
AB6
A
665 677Right-handed alpha
Helix 16
AB7
A
692 705Right-handed alpha
Helix 17
AB8
A
717 720Right-handed 310
Helix 18
AB9
A
721 722Right-handed 310
Helix 19
AC1
A
723 740Right-handed alpha
Helix 20
AC2
A
801 819Right-handed alpha
Helix 21
AC3
A
836 844Right-handed alpha
Helix 22
AC4
A
844 855Right-handed alpha
Helix 23
AC5
A
930 941Right-handed alpha
Helix 24
AC6
A
942 944Right-handed 310
Helix 25
AC7
A
955 971Right-handed alpha
Helix 26
AC8
A
977 981Right-handed 310
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There are 11 sheets in PDB entry 7YG6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
761 762first strand
Strand 2
A
772 778anti-parallel
Strand 3
A
786 791anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
761 762first strand
Strand 2
A
772 778anti-parallel
Strand 3
A
757 759anti-parallel
Strand 4
A
824 829parallel
Strand 5
A
862 869parallel
Strand 6
A
918 924anti-parallel
Strand 7
A
903 906anti-parallel
Strand 8
A
891 893anti-parallel
Strand 9
A
578 584anti-parallel
Strand 10
A
236 242anti-parallel
Strand 11
A
876 879anti-parallel
Strand 12
A
884 885anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
386 390anti-parallel
Strand 3
A
379 383anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
255 260anti-parallel
Strand 3
A
320 324anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
355 357anti-parallel
Strand 3
A
370 376anti-parallel
Strand 4
A
363 365anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
355 357anti-parallel
Strand 3
A
370 376anti-parallel
Strand 4
A
393 399anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
515 516anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
484 487anti-parallel
Strand 3
A
508 510anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 457first strand
Strand 2
A
461 463anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 591first strand
Strand 2
A
596 598anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 661first strand
Strand 2
A
624 628parallel
Strand 3
A
684 688parallel
Strand 4
A
711 715parallel
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