Analysis of interatomic Contacts of Structural Units in PDB entry:
7YGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YGN entry

There are 2 chains in PDB entry 7YGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 215LEU 971
B
 U 1 U 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 7YGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
251 262Right-handed alpha
Helix 2
AA2
A
262 267Right-handed alpha
Helix 3
AA3
A
314 316Right-handed 310
Helix 4
AA4
A
317 331Right-handed alpha
Helix 5
AA5
A
344 347Right-handed 310
Helix 6
AA6
A
387 399Right-handed alpha
Helix 7
AA7
A
402 414Right-handed alpha
Helix 8
AA8
A
450 458Right-handed alpha
Helix 9
AA9
A
502 508Right-handed alpha
Helix 10
AB1
A
509 520Right-handed alpha
Helix 11
AB2
A
522 540Right-handed alpha
Helix 12
AB3
A
540 549Right-handed alpha
Helix 13
AB4
A
586 593Right-handed alpha
Helix 14
AB5
A
609 611Right-handed 310
Helix 15
AB6
A
612 631Right-handed alpha
Helix 16
AB7
A
646 661Right-handed alpha
Helix 17
AB8
A
675 688Right-handed alpha
Helix 18
AB9
A
699 704Right-handed alpha
Helix 19
AC1
A
708 724Right-handed alpha
Helix 20
AC2
A
781 802Right-handed alpha
Helix 21
AC3
A
816 818Right-handed 310
Helix 22
AC4
A
819 826Right-handed alpha
Helix 23
AC5
A
826 833Right-handed alpha
Helix 24
AC6
A
834 838Right-handed 310
Helix 25
AC7
A
914 926Right-handed alpha
Helix 26
AC8
A
939 955Right-handed alpha
Helix 27
AC9
A
961 967Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 7YGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
769 775first strand
Strand 2
A
755 761anti-parallel
Strand 3
A
737 745anti-parallel
Strand 4
A
807 813parallel
Strand 5
A
844 851parallel
Strand 6
A
902 909anti-parallel
Strand 7
A
885 890anti-parallel
Strand 8
A
873 875anti-parallel
Strand 9
A
560 565anti-parallel
Strand 10
A
220 226anti-parallel
Strand 11
A
858 861anti-parallel
Strand 12
A
866 867anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
355 368anti-parallel
Strand 4
A
348 350anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
355 368anti-parallel
Strand 4
A
371 384anti-parallel
Strand 5
A
228 233anti-parallel
Strand 6
A
552 554anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
276 279anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
299 310anti-parallel
Strand 5
A
286 292anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
416 418anti-parallel
Strand 3
A
496 498anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
469 472anti-parallel
Strand 3
A
489 491anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
448 449anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 572first strand
Strand 2
A
577 579anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 641first strand
Strand 2
A
604 608parallel
Strand 3
A
666 671parallel
Strand 4
A
694 698parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il