Analysis of interatomic Contacts of Structural Units in PDB entry:
7YHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YHJ entry

There are 8 chains in PDB entry 7YHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 99	PRO 290
B	GLY 99	ASN 289
C	GLY 99	TRP 291
D	GLY 99	PRO 290
E	GLN 98	PRO 290
F	GLY 99	PRO 290
G	VAL 100	PRO 290
H	GLN 98	PRO 290

There are 61 helices in PDB entry 7YHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	111	Right-handed alpha
Helix 2	AA2	A	113	125	Right-handed alpha
Helix 3	AA3	A	139	146	Right-handed alpha
Helix 4	AA4	A	196	209	Right-handed alpha
Helix 5	AA5	A	221	231	Right-handed alpha
Helix 6	AA6	A	241	243	Right-handed 310
Helix 7	AA7	A	251	255	Right-handed 310
Helix 8	AA8	A	274	287	Right-handed alpha
Helix 9	AA9	B	107	111	Right-handed alpha
Helix 10	AB1	B	113	125	Right-handed alpha
Helix 11	AB2	B	136	138	Right-handed 310
Helix 12	AB3	B	139	146	Right-handed alpha
Helix 13	AB4	B	196	209	Right-handed alpha
Helix 14	AB5	B	221	231	Right-handed alpha
Helix 15	AB6	B	241	243	Right-handed 310
Helix 16	AB7	B	251	255	Right-handed 310
Helix 17	AB8	B	274	286	Right-handed alpha
Helix 18	AB9	C	107	113	Right-handed alpha
Helix 19	AC1	C	113	125	Right-handed alpha
Helix 20	AC2	C	136	138	Right-handed 310
Helix 21	AC3	C	139	146	Right-handed alpha
Helix 22	AC4	C	196	209	Right-handed alpha
Helix 23	AC5	C	221	231	Right-handed alpha
Helix 24	AC6	C	241	243	Right-handed 310
Helix 25	AC7	C	251	255	Right-handed 310
Helix 26	AC8	C	276	286	Right-handed alpha
Helix 27	AC9	D	107	125	Right-handed alpha
Helix 28	AD1	D	139	146	Right-handed alpha
Helix 29	AD2	D	196	208	Right-handed alpha
Helix 30	AD3	D	221	231	Right-handed alpha
Helix 31	AD4	D	241	243	Right-handed 310
Helix 32	AD5	D	251	255	Right-handed 310
Helix 33	AD6	D	275	289	Right-handed alpha
Helix 34	AD7	E	107	125	Right-handed alpha
Helix 35	AD8	E	139	146	Right-handed alpha
Helix 36	AD9	E	196	208	Right-handed alpha
Helix 37	AE1	E	221	231	Right-handed alpha
Helix 38	AE2	E	241	243	Right-handed 310
Helix 39	AE3	E	251	255	Right-handed 310
Helix 40	AE4	E	274	286	Right-handed alpha
Helix 41	AE5	F	107	125	Right-handed alpha
Helix 42	AE6	F	139	146	Right-handed alpha
Helix 43	AE7	F	196	208	Right-handed alpha
Helix 44	AE8	F	221	231	Right-handed alpha
Helix 45	AE9	F	241	243	Right-handed 310
Helix 46	AF1	F	251	255	Right-handed 310
Helix 47	AF2	F	274	289	Right-handed alpha
Helix 48	AF3	G	109	125	Right-handed alpha
Helix 49	AF4	G	139	146	Right-handed alpha
Helix 50	AF5	G	196	208	Right-handed alpha
Helix 51	AF6	G	221	231	Right-handed alpha
Helix 52	AF7	G	241	243	Right-handed 310
Helix 53	AF8	G	251	255	Right-handed 310
Helix 54	AF9	G	274	289	Right-handed alpha
Helix 55	AG1	H	106	125	Right-handed alpha
Helix 56	AG2	H	138	146	Right-handed alpha
Helix 57	AG3	H	196	208	Right-handed alpha
Helix 58	AG4	H	221	231	Right-handed alpha
Helix 59	AG5	H	241	243	Right-handed 310
Helix 60	AG6	H	251	255	Right-handed 310
Helix 61	AG7	H	274	289	Right-handed alpha

There are 24 sheets in PDB entry 7YHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	135	first strand
Strand 2	A	100	106	parallel
Strand 3	A	151	154	parallel
Strand 4	A	262	268	anti-parallel
Strand 5	A	162	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	239	first strand
Strand 2	A	171	176	anti-parallel
Strand 3	A	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	213	219	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	135	first strand
Strand 2	B	100	106	parallel
Strand 3	B	151	154	parallel
Strand 4	B	262	267	anti-parallel
Strand 5	B	163	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	239	first strand
Strand 2	B	171	176	anti-parallel
Strand 3	B	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	213	219	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	100	106	parallel
Strand 3	C	151	154	parallel
Strand 4	C	262	268	anti-parallel
Strand 5	C	162	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	239	first strand
Strand 2	C	171	176	anti-parallel
Strand 3	C	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	213	219	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	135	first strand
Strand 2	D	100	106	parallel
Strand 3	D	151	154	parallel
Strand 4	D	262	268	anti-parallel
Strand 5	D	162	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	239	first strand
Strand 2	D	171	176	anti-parallel
Strand 3	D	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	213	219	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	135	first strand
Strand 2	E	100	106	parallel
Strand 3	E	151	154	parallel
Strand 4	E	262	268	anti-parallel
Strand 5	E	162	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	239	first strand
Strand 2	E	171	176	anti-parallel
Strand 3	E	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	192	first strand
Strand 2	E	213	219	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	135	first strand
Strand 2	F	100	106	parallel
Strand 3	F	151	154	parallel
Strand 4	F	262	268	anti-parallel
Strand 5	F	162	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	239	first strand
Strand 2	F	171	176	anti-parallel
Strand 3	F	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	192	first strand
Strand 2	F	213	219	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	135	first strand
Strand 2	G	101	106	parallel
Strand 3	G	151	154	parallel
Strand 4	G	262	268	anti-parallel
Strand 5	G	162	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	236	239	first strand
Strand 2	G	171	176	anti-parallel
Strand 3	G	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	192	first strand
Strand 2	G	213	219	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	134	first strand
Strand 2	H	100	105	parallel
Strand 3	H	151	154	parallel
Strand 4	H	262	268	anti-parallel
Strand 5	H	162	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	236	239	first strand
Strand 2	H	171	176	anti-parallel
Strand 3	H	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	187	192	first strand
Strand 2	H	213	219	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YHJ