Analysis of interatomic Contacts of Structural Units in PDB entry:
7YHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YHO entry

There are 3 chains in PDB entry 7YHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 560LEU 1374
B
 A 2 A 27
C
 T 17 T 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7YHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
560 584Right-handed alpha
Helix 2
AA2
A
595 606Right-handed alpha
Helix 3
AA3
A
610 625Right-handed alpha
Helix 4
AA4
A
884 891Right-handed alpha
Helix 5
AA5
A
892 900Right-handed alpha
Helix 6
AA6
A
905 923Right-handed alpha
Helix 7
AA7
A
929 934Right-handed 310
Helix 8
AA8
A
936 947Right-handed alpha
Helix 9
AA9
A
951 962Right-handed alpha
Helix 10
AB1
A
971 981Right-handed alpha
Helix 11
AB2
A
1007 1016Right-handed alpha
Helix 12
AB3
A
1019 1037Right-handed alpha
Helix 13
AB4
A
1048 1052Right-handed 310
Helix 14
AB5
A
1054 1061Right-handed alpha
Helix 15
AB6
A
1212 1217Right-handed 310
Helix 16
AB7
A
1286 1291Right-handed alpha
Helix 17
AB8
A
1295 1299Right-handed 310
Helix 18
AB9
A
1309 1315Right-handed alpha
Helix 19
AC1
A
1337 1342Right-handed alpha
Helix 20
AC2
A
1346 1356Right-handed alpha
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There are 2 sheets in PDB entry 7YHO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1204 1207first strand
Strand 2
A
1230 1232anti-parallel
Strand 3
A
1281 1285anti-parallel
Strand 4
A
1305 1308anti-parallel
Strand 5
A
1357 1360parallel
Strand 6
A
1329 1334parallel
Strand 7
A
1204 1207anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1363 1364first strand
Strand 2
A
1371 1372anti-parallel
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