Analysis of interatomic Contacts of Structural Units in PDB entry:
7YI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YI3 entry

There are 5 chains in PDB entry 7YI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 664LEU 1322
B
 ASP 17LYS 384
C
 ILE 220MET 401
D
 THR 101ARG 564
E
 ASN 545ARG 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 7YI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
665 677Right-handed alpha
Helix 2
AA2
A
678 694Right-handed alpha
Helix 3
AA3
A
698 711Right-handed alpha
Helix 4
AA4
A
715 722Right-handed alpha
Helix 5
AA5
A
759 763Right-handed 310
Helix 6
AA6
A
771 777Right-handed alpha
Helix 7
AA7
A
785 790Right-handed alpha
Helix 8
AA8
A
801 838Right-handed alpha
Helix 9
AA9
A
861 871Right-handed alpha
Helix 10
AB1
A
875 885Right-handed alpha
Helix 11
AB2
A
891 922Right-handed alpha
Helix 12
AB3
A
923 928Right-handed alpha
Helix 13
AB4
A
929 934Right-handed alpha
Helix 14
AB5
A
934 943Right-handed alpha
Helix 15
AB6
A
944 961Right-handed alpha
Helix 16
AB7
A
983 999Right-handed alpha
Helix 17
AB8
A
1003 1023Right-handed alpha
Helix 18
AB9
A
1141 1164Right-handed alpha
Helix 19
AC1
A
1164 1174Right-handed alpha
Helix 20
AC2
A
1189 1194Right-handed alpha
Helix 21
AC3
A
1202 1217Right-handed alpha
Helix 22
AC4
A
1220 1233Right-handed alpha
Helix 23
AC5
A
1236 1240Right-handed 310
Helix 24
AC6
A
1241 1259Right-handed alpha
Helix 25
AC7
A
1259 1276Right-handed alpha
Helix 26
AC8
A
1280 1294Right-handed alpha
Helix 27
AC9
B
28 32Right-handed 310
Helix 28
AD1
B
42 54Right-handed alpha
Helix 29
AD2
B
70 75Right-handed alpha
Helix 30
AD3
B
79 87Right-handed alpha
Helix 31
AD4
B
93 97Right-handed 310
Helix 32
AD5
B
98 105Right-handed alpha
Helix 33
AD6
B
115 137Right-handed alpha
Helix 34
AD7
B
164 177Right-handed alpha
Helix 35
AD8
B
190 197Right-handed alpha
Helix 36
AD9
B
226 230Right-handed 310
Helix 37
AE1
B
243 262Right-handed alpha
Helix 38
AE2
B
287 300Right-handed alpha
Helix 39
AE3
B
314 330Right-handed alpha
Helix 40
AE4
B
343 348Right-handed 310
Helix 41
AE5
B
365 381Right-handed alpha
Helix 42
AE6
C
225 241Right-handed alpha
Helix 43
AE7
C
253 267Right-handed alpha
Helix 44
AE8
C
271 297Right-handed alpha
Helix 45
AE9
C
302 316Right-handed alpha
Helix 46
AF1
C
321 325Right-handed 310
Helix 47
AF2
C
337 343Right-handed alpha
Helix 48
AF3
C
348 369Right-handed alpha
Helix 49
AF4
C
391 401Right-handed alpha
Helix 50
AF5
D
120 128Right-handed alpha
Helix 51
AF6
D
171 175Right-handed 310
Helix 52
AF7
D
182 187Right-handed 310
Helix 53
AF8
D
303 312Right-handed alpha
Helix 54
AF9
D
317 331Right-handed alpha
Helix 55
AG1
D
336 344Right-handed alpha
Helix 56
AG2
D
403 407Right-handed 310
Helix 57
AG3
D
430 434Right-handed 310
Helix 58
AG4
D
544 562Right-handed alpha
Helix 59
AG5
E
546 563Right-handed alpha
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There are 7 sheets in PDB entry 7YI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
782 783anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
975 978first strand
Strand 2
A
1311 1317anti-parallel
Strand 3
A
1300 1306anti-parallel
Strand 4
A
1135 1140anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
21 24parallel
Strand 3
B
141 144parallel
Strand 4
B
305 308parallel
Strand 5
B
266 270parallel
Strand 6
B
180 184parallel
Strand 7
B
203 210parallel
Strand 8
B
233 238parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
387 389anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
364 366first strand
Strand 2
D
372 374anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
473 476first strand
Strand 2
D
490 493anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
505 506first strand
Strand 2
D
539 541parallel
Strand 3
D
520 521parallel
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