Analysis of interatomic Contacts of Structural Units in PDB entry:
7YIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YIB entry

There is 1 chain in PDB entry 7YIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5VAL 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7YIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
26 32Right-handed 310
Helix 3
AA3
A
84 95Right-handed 310
Helix 4
AA4
A
100 112Right-handed alpha
Helix 5
AA5
A
130 135Right-handed alpha
Helix 6
AA6
A
144 149Right-handed alpha
Helix 7
AA7
A
156 169Right-handed alpha
Helix 8
AA8
A
173 182Right-handed alpha
Helix 9
AA9
A
192 207Right-handed alpha
Helix 10
AB1
A
218 230Right-handed alpha
Helix 11
AB2
A
237 247Right-handed alpha
Helix 12
AB3
A
277 279Right-handed 310
Helix 13
AB4
A
284 288Right-handed alpha
Helix 14
AB5
A
296 302Right-handed alpha
Helix 15
AB6
A
302 316Right-handed alpha
Helix 16
AB7
A
328 339Right-handed alpha
Helix 17
AB8
A
394 406Right-handed alpha
Helix 18
AB9
A
428 446Right-handed alpha
Helix 19
AC1
A
461 472Right-handed alpha
Helix 20
AC2
A
473 476Right-handed 310
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There are 4 sheets in PDB entry 7YIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
116 121parallel
Strand 3
A
66 73parallel
Strand 4
A
50 58anti-parallel
Strand 5
A
34 39anti-parallel
Strand 6
A
234 236anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
125 126parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
259 264parallel
Strand 3
A
320 326parallel
Strand 4
A
346 353parallel
Strand 5
A
356 360anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 377first strand
Strand 2
A
409 416anti-parallel
Strand 3
A
383 389parallel
Strand 4
A
454 459parallel
Strand 5
A
478 484parallel
Strand 6
A
492 499anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il