Analysis of interatomic Contacts of Structural Units in PDB entry:
7YID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YID entry

There are 4 chains in PDB entry 7YID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	GLN 692
B	PRO 11	GLN 692
C	PRO 11	GLN 692
D	PRO 11	GLN 692

There are112 helices in PDB entry 7YID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	24	Right-handed alpha
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	A	74	87	Right-handed alpha
Helix 5	AA5	A	146	156	Right-handed alpha
Helix 6	AA6	A	172	186	Right-handed alpha
Helix 7	AA7	A	211	238	Right-handed alpha
Helix 8	AA8	A	248	265	Right-handed alpha
Helix 9	AA9	A	266	268	Right-handed 310
Helix 10	AB1	A	280	293	Right-handed alpha
Helix 11	AB2	A	294	300	Right-handed alpha
Helix 12	AB3	A	321	326	Right-handed alpha
Helix 13	AB4	A	327	329	Right-handed 310
Helix 14	AB5	A	330	338	Right-handed alpha
Helix 15	AB6	A	340	344	Right-handed 310
Helix 16	AB7	A	345	375	Right-handed alpha
Helix 17	AB8	A	387	397	Right-handed alpha
Helix 18	AB9	A	414	429	Right-handed alpha
Helix 19	AC1	A	442	495	Right-handed alpha
Helix 20	AC2	A	501	517	Right-handed alpha
Helix 21	AC3	A	520	527	Right-handed alpha
Helix 22	AC4	A	531	541	Right-handed alpha
Helix 23	AC5	A	541	546	Right-handed alpha
Helix 24	AC6	A	555	566	Right-handed alpha
Helix 25	AC7	A	616	620	Right-handed 310
Helix 26	AC8	A	643	653	Right-handed alpha
Helix 27	AC9	A	654	664	Right-handed alpha
Helix 28	AD1	A	678	692	Right-handed alpha
Helix 29	AD2	B	15	24	Right-handed alpha
Helix 30	AD3	B	46	51	Right-handed alpha
Helix 31	AD4	B	65	69	Right-handed 310
Helix 32	AD5	B	74	87	Right-handed alpha
Helix 33	AD6	B	146	156	Right-handed alpha
Helix 34	AD7	B	172	186	Right-handed alpha
Helix 35	AD8	B	211	238	Right-handed alpha
Helix 36	AD9	B	248	265	Right-handed alpha
Helix 37	AE1	B	266	268	Right-handed 310
Helix 38	AE2	B	280	293	Right-handed alpha
Helix 39	AE3	B	294	300	Right-handed alpha
Helix 40	AE4	B	321	326	Right-handed alpha
Helix 41	AE5	B	327	329	Right-handed 310
Helix 42	AE6	B	330	338	Right-handed alpha
Helix 43	AE7	B	340	344	Right-handed 310
Helix 44	AE8	B	345	375	Right-handed alpha
Helix 45	AE9	B	387	397	Right-handed alpha
Helix 46	AF1	B	414	429	Right-handed alpha
Helix 47	AF2	B	442	495	Right-handed alpha
Helix 48	AF3	B	501	517	Right-handed alpha
Helix 49	AF4	B	520	527	Right-handed alpha
Helix 50	AF5	B	531	541	Right-handed alpha
Helix 51	AF6	B	541	546	Right-handed alpha
Helix 52	AF7	B	555	566	Right-handed alpha
Helix 53	AF8	B	616	620	Right-handed 310
Helix 54	AF9	B	643	653	Right-handed alpha
Helix 55	AG1	B	654	664	Right-handed alpha
Helix 56	AG2	B	678	692	Right-handed alpha
Helix 57	AG3	C	15	24	Right-handed alpha
Helix 58	AG4	C	46	51	Right-handed alpha
Helix 59	AG5	C	65	69	Right-handed 310
Helix 60	AG6	C	74	87	Right-handed alpha
Helix 61	AG7	C	146	156	Right-handed alpha
Helix 62	AG8	C	172	186	Right-handed alpha
Helix 63	AG9	C	211	238	Right-handed alpha
Helix 64	AH1	C	248	265	Right-handed alpha
Helix 65	AH2	C	266	268	Right-handed 310
Helix 66	AH3	C	280	293	Right-handed alpha
Helix 67	AH4	C	294	300	Right-handed alpha
Helix 68	AH5	C	321	326	Right-handed alpha
Helix 69	AH6	C	327	329	Right-handed 310
Helix 70	AH7	C	330	338	Right-handed alpha
Helix 71	AH8	C	340	344	Right-handed 310
Helix 72	AH9	C	345	375	Right-handed alpha
Helix 73	AI1	C	387	397	Right-handed alpha
Helix 74	AI2	C	414	429	Right-handed alpha
Helix 75	AI3	C	442	495	Right-handed alpha
Helix 76	AI4	C	501	517	Right-handed alpha
Helix 77	AI5	C	520	527	Right-handed alpha
Helix 78	AI6	C	531	541	Right-handed alpha
Helix 79	AI7	C	541	546	Right-handed alpha
Helix 80	AI8	C	555	566	Right-handed alpha
Helix 81	AI9	C	616	620	Right-handed 310
Helix 82	AJ1	C	643	653	Right-handed alpha
Helix 83	AJ2	C	654	664	Right-handed alpha
Helix 84	AJ3	C	678	692	Right-handed alpha
Helix 85	AJ4	D	15	24	Right-handed alpha
Helix 86	AJ5	D	46	51	Right-handed alpha
Helix 87	AJ6	D	65	69	Right-handed 310
Helix 88	AJ7	D	74	87	Right-handed alpha
Helix 89	AJ8	D	146	156	Right-handed alpha
Helix 90	AJ9	D	172	186	Right-handed alpha
Helix 91	AK1	D	211	238	Right-handed alpha
Helix 92	AK2	D	248	265	Right-handed alpha
Helix 93	AK3	D	266	268	Right-handed 310
Helix 94	AK4	D	280	293	Right-handed alpha
Helix 95	AK5	D	294	300	Right-handed alpha
Helix 96	AK6	D	321	326	Right-handed alpha
Helix 97	AK7	D	327	329	Right-handed 310
Helix 98	AK8	D	330	338	Right-handed alpha
Helix 99	AK9	D	340	344	Right-handed 310
Helix 100	AL1	D	345	375	Right-handed alpha
Helix 101	AL2	D	387	397	Right-handed alpha
Helix 102	AL3	D	414	429	Right-handed alpha
Helix 103	AL4	D	442	495	Right-handed alpha
Helix 104	AL5	D	501	517	Right-handed alpha
Helix 105	AL6	D	520	527	Right-handed alpha
Helix 106	AL7	D	531	541	Right-handed alpha
Helix 107	AL8	D	541	546	Right-handed alpha
Helix 108	AL9	D	555	566	Right-handed alpha
Helix 109	AM1	D	616	620	Right-handed 310
Helix 110	AM2	D	643	653	Right-handed alpha
Helix 111	AM3	D	654	664	Right-handed alpha
Helix 112	AM4	D	678	692	Right-handed alpha

There are 20 sheets in PDB entry 7YID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	112	115	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	104	109	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	570	first strand
Strand 2	A	637	642	anti-parallel
Strand 3	A	586	592	anti-parallel
Strand 4	A	612	614	anti-parallel
Strand 5	A	668	669	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	578	first strand
Strand 2	A	629	632	anti-parallel
Strand 3	A	595	598	anti-parallel
Strand 4	A	603	607	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	584	first strand
Strand 2	A	624	625	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	112	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	104	109	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	568	570	first strand
Strand 2	B	637	642	anti-parallel
Strand 3	B	586	592	anti-parallel
Strand 4	B	612	614	anti-parallel
Strand 5	B	668	669	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	578	first strand
Strand 2	B	629	632	anti-parallel
Strand 3	B	595	598	anti-parallel
Strand 4	B	603	607	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	624	625	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	121	125	anti-parallel
Strand 3	C	112	115	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	98	first strand
Strand 2	C	104	109	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	570	first strand
Strand 2	C	637	642	anti-parallel
Strand 3	C	586	592	anti-parallel
Strand 4	C	612	614	anti-parallel
Strand 5	C	668	669	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	576	578	first strand
Strand 2	C	629	632	anti-parallel
Strand 3	C	595	598	anti-parallel
Strand 4	C	603	607	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	584	first strand
Strand 2	C	624	625	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	121	125	anti-parallel
Strand 3	D	112	115	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	98	first strand
Strand 2	D	104	109	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	568	570	first strand
Strand 2	D	637	642	anti-parallel
Strand 3	D	586	592	anti-parallel
Strand 4	D	612	614	anti-parallel
Strand 5	D	668	669	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	576	578	first strand
Strand 2	D	629	632	anti-parallel
Strand 3	D	595	598	anti-parallel
Strand 4	D	603	607	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	584	first strand
Strand 2	D	624	625	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YID

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YID