Analysis of interatomic Contacts of Structural Units in PDB entry:
7YII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YII entry

There are 2 chains in PDB entry 7YII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 275
B
 ALA 2LEU 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 7YII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 50Right-handed alpha
Helix 2
AA2
A
74 89Right-handed alpha
Helix 3
AA3
A
102 115Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
141 148Right-handed alpha
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
155 165Right-handed alpha
Helix 8
AA8
A
177 191Right-handed alpha
Helix 9
AA9
A
192 199Right-handed alpha
Helix 10
AB1
A
206 213Right-handed alpha
Helix 11
AB2
A
229 240Right-handed alpha
Helix 12
AB3
A
254 259Right-handed alpha
Helix 13
AB4
A
259 273Right-handed alpha
Helix 14
AB5
B
41 50Right-handed alpha
Helix 15
AB6
B
74 89Right-handed alpha
Helix 16
AB7
B
102 115Right-handed alpha
Helix 17
AB8
B
135 139Right-handed 310
Helix 18
AB9
B
141 148Right-handed alpha
Helix 19
AC1
B
149 153Right-handed 310
Helix 20
AC2
B
155 165Right-handed alpha
Helix 21
AC3
B
177 191Right-handed alpha
Helix 22
AC4
B
192 201Right-handed alpha
Helix 23
AC5
B
206 212Right-handed alpha
Helix 24
AC6
B
229 240Right-handed alpha
Helix 25
AC7
B
254 259Right-handed alpha
Helix 26
AC8
B
259 273Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7YII. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
26 30parallel
Strand 5
A
95 100parallel
Strand 6
A
119 125parallel
Strand 7
A
217 222parallel
Strand 8
A
243 248parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
13 19anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
26 30parallel
Strand 5
B
95 100parallel
Strand 6
B
119 125parallel
Strand 7
B
217 222parallel
Strand 8
B
243 248parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il