Analysis of interatomic Contacts of Structural Units in PDB entry:
7YIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YIJ entry

There are 4 chains in PDB entry 7YIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	GLN 692
B	PRO 11	GLN 692
C	PRO 11	GLN 692
D	PRO 11	GLN 692

There are 88 helices in PDB entry 7YIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	79	Right-handed alpha
Helix 2	AA2	A	150	154	Right-handed 310
Helix 3	AA3	A	172	178	Right-handed alpha
Helix 4	AA4	A	183	187	Right-handed 310
Helix 5	AA5	A	211	238	Right-handed alpha
Helix 6	AA6	A	245	265	Right-handed alpha
Helix 7	AA7	A	282	300	Right-handed alpha
Helix 8	AA8	A	321	326	Right-handed alpha
Helix 9	AA9	A	327	330	Right-handed 310
Helix 10	AB1	A	331	337	Right-handed alpha
Helix 11	AB2	A	347	375	Right-handed alpha
Helix 12	AB3	A	387	397	Right-handed alpha
Helix 13	AB4	A	414	431	Right-handed alpha
Helix 14	AB5	A	442	463	Right-handed alpha
Helix 15	AB6	A	464	494	Right-handed alpha
Helix 16	AB7	A	498	514	Right-handed alpha
Helix 17	AB8	A	524	528	Right-handed 310
Helix 18	AB9	A	529	542	Right-handed alpha
Helix 19	AC1	A	557	563	Right-handed alpha
Helix 20	AC2	A	643	653	Right-handed alpha
Helix 21	AC3	A	654	658	Right-handed 310
Helix 22	AC4	A	681	691	Right-handed alpha
Helix 23	AC5	B	74	79	Right-handed alpha
Helix 24	AC6	B	150	154	Right-handed 310
Helix 25	AC7	B	172	178	Right-handed alpha
Helix 26	AC8	B	183	187	Right-handed 310
Helix 27	AC9	B	211	238	Right-handed alpha
Helix 28	AD1	B	245	265	Right-handed alpha
Helix 29	AD2	B	282	300	Right-handed alpha
Helix 30	AD3	B	321	326	Right-handed alpha
Helix 31	AD4	B	327	330	Right-handed 310
Helix 32	AD5	B	331	337	Right-handed alpha
Helix 33	AD6	B	347	375	Right-handed alpha
Helix 34	AD7	B	387	397	Right-handed alpha
Helix 35	AD8	B	414	431	Right-handed alpha
Helix 36	AD9	B	442	463	Right-handed alpha
Helix 37	AE1	B	464	494	Right-handed alpha
Helix 38	AE2	B	498	514	Right-handed alpha
Helix 39	AE3	B	524	528	Right-handed 310
Helix 40	AE4	B	529	542	Right-handed alpha
Helix 41	AE5	B	557	563	Right-handed alpha
Helix 42	AE6	B	643	653	Right-handed alpha
Helix 43	AE7	B	654	658	Right-handed 310
Helix 44	AE8	B	681	691	Right-handed alpha
Helix 45	AE9	C	74	79	Right-handed alpha
Helix 46	AF1	C	150	154	Right-handed 310
Helix 47	AF2	C	172	178	Right-handed alpha
Helix 48	AF3	C	183	187	Right-handed 310
Helix 49	AF4	C	211	238	Right-handed alpha
Helix 50	AF5	C	245	265	Right-handed alpha
Helix 51	AF6	C	282	300	Right-handed alpha
Helix 52	AF7	C	321	326	Right-handed alpha
Helix 53	AF8	C	327	330	Right-handed 310
Helix 54	AF9	C	331	337	Right-handed alpha
Helix 55	AG1	C	347	375	Right-handed alpha
Helix 56	AG2	C	387	397	Right-handed alpha
Helix 57	AG3	C	414	431	Right-handed alpha
Helix 58	AG4	C	442	463	Right-handed alpha
Helix 59	AG5	C	464	494	Right-handed alpha
Helix 60	AG6	C	498	514	Right-handed alpha
Helix 61	AG7	C	524	528	Right-handed 310
Helix 62	AG8	C	529	542	Right-handed alpha
Helix 63	AG9	C	557	563	Right-handed alpha
Helix 64	AH1	C	643	653	Right-handed alpha
Helix 65	AH2	C	654	658	Right-handed 310
Helix 66	AH3	C	681	691	Right-handed alpha
Helix 67	AH4	D	74	79	Right-handed alpha
Helix 68	AH5	D	150	154	Right-handed 310
Helix 69	AH6	D	172	178	Right-handed alpha
Helix 70	AH7	D	183	187	Right-handed 310
Helix 71	AH8	D	211	238	Right-handed alpha
Helix 72	AH9	D	245	265	Right-handed alpha
Helix 73	AI1	D	282	300	Right-handed alpha
Helix 74	AI2	D	321	326	Right-handed alpha
Helix 75	AI3	D	327	330	Right-handed 310
Helix 76	AI4	D	331	337	Right-handed alpha
Helix 77	AI5	D	347	375	Right-handed alpha
Helix 78	AI6	D	387	397	Right-handed alpha
Helix 79	AI7	D	414	431	Right-handed alpha
Helix 80	AI8	D	442	463	Right-handed alpha
Helix 81	AI9	D	464	494	Right-handed alpha
Helix 82	AJ1	D	498	514	Right-handed alpha
Helix 83	AJ2	D	524	528	Right-handed 310
Helix 84	AJ3	D	529	542	Right-handed alpha
Helix 85	AJ4	D	557	563	Right-handed alpha
Helix 86	AJ5	D	643	653	Right-handed alpha
Helix 87	AJ6	D	654	658	Right-handed 310
Helix 88	AJ7	D	681	691	Right-handed alpha

There are 8 sheets in PDB entry 7YIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	570	first strand
Strand 2	A	637	642	anti-parallel
Strand 3	A	586	592	anti-parallel
Strand 4	A	612	613	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	606	first strand
Strand 2	A	595	598	anti-parallel
Strand 3	A	631	632	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	570	first strand
Strand 2	B	637	642	anti-parallel
Strand 3	B	586	592	anti-parallel
Strand 4	B	612	613	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	606	first strand
Strand 2	B	595	598	anti-parallel
Strand 3	B	631	632	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	570	first strand
Strand 2	C	637	642	anti-parallel
Strand 3	C	586	592	anti-parallel
Strand 4	C	612	613	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	606	first strand
Strand 2	C	595	598	anti-parallel
Strand 3	C	631	632	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	567	570	first strand
Strand 2	D	637	642	anti-parallel
Strand 3	D	586	592	anti-parallel
Strand 4	D	612	613	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	606	first strand
Strand 2	D	595	598	anti-parallel
Strand 3	D	631	632	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YIJ