Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YJ0 entry

There are 4 chains in PDB entry 7YJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	GLY 651
B	ASN 6	GLY 651
C	ASN 6	GLY 651
D	ASN 6	GLY 651

There are 89 helices in PDB entry 7YJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	40	Right-handed alpha
Helix 2	AA2	A	66	78	Right-handed alpha
Helix 3	AA3	A	102	112	Right-handed alpha
Helix 4	AA4	A	114	119	Right-handed alpha
Helix 5	AA5	A	159	174	Right-handed alpha
Helix 6	AA6	A	229	234	Right-handed alpha
Helix 7	AA7	A	306	318	Right-handed alpha
Helix 8	AA8	A	355	357	Right-handed 310
Helix 9	AA9	A	362	365	Right-handed 310
Helix 10	AB1	A	366	388	Right-handed alpha
Helix 11	AB2	A	392	416	Right-handed alpha
Helix 12	AB3	A	449	467	Right-handed alpha
Helix 13	AB4	A	510	513	Right-handed 310
Helix 14	AB5	A	531	545	Right-handed alpha
Helix 15	AB6	A	548	553	Right-handed alpha
Helix 16	AB7	A	554	557	Right-handed 310
Helix 17	AB8	A	568	577	Right-handed alpha
Helix 18	AB9	A	579	585	Right-handed alpha
Helix 19	AC1	A	602	608	Right-handed alpha
Helix 20	AC2	A	631	634	Right-handed 310
Helix 21	AC3	A	635	643	Right-handed alpha
Helix 22	AC4	B	35	40	Right-handed alpha
Helix 23	AC5	B	66	79	Right-handed alpha
Helix 24	AC6	B	102	112	Right-handed alpha
Helix 25	AC7	B	114	119	Right-handed alpha
Helix 26	AC8	B	159	174	Right-handed alpha
Helix 27	AC9	B	229	235	Right-handed alpha
Helix 28	AD1	B	282	284	Right-handed 310
Helix 29	AD2	B	301	305	Right-handed 310
Helix 30	AD3	B	306	318	Right-handed alpha
Helix 31	AD4	B	355	357	Right-handed 310
Helix 32	AD5	B	362	365	Right-handed 310
Helix 33	AD6	B	366	389	Right-handed alpha
Helix 34	AD7	B	392	424	Right-handed alpha
Helix 35	AD8	B	449	463	Right-handed alpha
Helix 36	AD9	B	510	513	Right-handed 310
Helix 37	AE1	B	531	545	Right-handed alpha
Helix 38	AE2	B	548	553	Right-handed alpha
Helix 39	AE3	B	554	557	Right-handed 310
Helix 40	AE4	B	568	578	Right-handed alpha
Helix 41	AE5	B	579	585	Right-handed alpha
Helix 42	AE6	B	602	608	Right-handed alpha
Helix 43	AE7	B	633	635	Right-handed 310
Helix 44	AE8	B	636	643	Right-handed alpha
Helix 45	AE9	C	35	40	Right-handed alpha
Helix 46	AF1	C	66	79	Right-handed alpha
Helix 47	AF2	C	102	112	Right-handed alpha
Helix 48	AF3	C	114	119	Right-handed alpha
Helix 49	AF4	C	159	174	Right-handed alpha
Helix 50	AF5	C	229	234	Right-handed alpha
Helix 51	AF6	C	282	284	Right-handed 310
Helix 52	AF7	C	301	305	Right-handed 310
Helix 53	AF8	C	306	318	Right-handed alpha
Helix 54	AF9	C	355	357	Right-handed 310
Helix 55	AG1	C	362	365	Right-handed 310
Helix 56	AG2	C	366	388	Right-handed alpha
Helix 57	AG3	C	392	420	Right-handed alpha
Helix 58	AG4	C	449	467	Right-handed alpha
Helix 59	AG5	C	510	513	Right-handed 310
Helix 60	AG6	C	531	545	Right-handed alpha
Helix 61	AG7	C	548	553	Right-handed alpha
Helix 62	AG8	C	554	557	Right-handed 310
Helix 63	AG9	C	568	577	Right-handed alpha
Helix 64	AH1	C	579	585	Right-handed alpha
Helix 65	AH2	C	602	608	Right-handed alpha
Helix 66	AH3	C	633	635	Right-handed 310
Helix 67	AH4	C	636	643	Right-handed alpha
Helix 68	AH5	D	35	40	Right-handed alpha
Helix 69	AH6	D	66	79	Right-handed alpha
Helix 70	AH7	D	102	112	Right-handed alpha
Helix 71	AH8	D	114	119	Right-handed alpha
Helix 72	AH9	D	159	174	Right-handed alpha
Helix 73	AI1	D	229	234	Right-handed alpha
Helix 74	AI2	D	301	305	Right-handed 310
Helix 75	AI3	D	306	318	Right-handed alpha
Helix 76	AI4	D	355	357	Right-handed 310
Helix 77	AI5	D	362	365	Right-handed 310
Helix 78	AI6	D	366	388	Right-handed alpha
Helix 79	AI7	D	392	418	Right-handed alpha
Helix 80	AI8	D	449	467	Right-handed alpha
Helix 81	AI9	D	510	513	Right-handed 310
Helix 82	AJ1	D	531	545	Right-handed alpha
Helix 83	AJ2	D	548	553	Right-handed alpha
Helix 84	AJ3	D	554	557	Right-handed 310
Helix 85	AJ4	D	568	577	Right-handed alpha
Helix 86	AJ5	D	579	585	Right-handed alpha
Helix 87	AJ6	D	602	608	Right-handed alpha
Helix 88	AJ7	D	633	635	Right-handed 310
Helix 89	AJ8	D	636	643	Right-handed alpha

There are 33 sheets in PDB entry 7YJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	32	34	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	83	86	parallel
Strand 3	A	57	63	parallel
Strand 4	A	213	223	parallel
Strand 5	A	201	207	anti-parallel
Strand 6	A	182	189	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	83	86	parallel
Strand 3	A	57	63	parallel
Strand 4	A	213	223	parallel
Strand 5	A	351	353	parallel
Strand 6	A	346	347	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	155	157	anti-parallel
Strand 3	A	124	125	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	141	first strand
Strand 2	A	127	132	anti-parallel
Strand 3	A	266	269	parallel
Strand 4	A	276	280	anti-parallel
Strand 5	A	286	292	anti-parallel
Strand 6	A	241	253	anti-parallel
Strand 7	A	331	341	anti-parallel
Strand 8	A	359	360	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	323	325	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	500	first strand
Strand 2	A	506	508	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	590	first strand
Strand 2	A	559	565	parallel
Strand 3	A	519	524	parallel
Strand 4	A	615	619	anti-parallel
Strand 5	A	625	629	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	32	34	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	83	86	parallel
Strand 3	B	57	63	parallel
Strand 4	B	213	223	parallel
Strand 5	B	201	207	anti-parallel
Strand 6	B	182	189	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	83	86	parallel
Strand 3	B	57	63	parallel
Strand 4	B	213	223	parallel
Strand 5	B	351	353	parallel
Strand 6	B	346	347	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	155	157	anti-parallel
Strand 3	B	124	125	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	141	first strand
Strand 2	B	127	132	anti-parallel
Strand 3	B	266	270	parallel
Strand 4	B	274	280	anti-parallel
Strand 5	B	286	292	anti-parallel
Strand 6	B	241	253	anti-parallel
Strand 7	B	331	341	anti-parallel
Strand 8	B	359	360	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	323	325	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	500	first strand
Strand 2	B	506	508	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	590	first strand
Strand 2	B	559	565	parallel
Strand 3	B	519	524	parallel
Strand 4	B	615	619	anti-parallel
Strand 5	B	625	629	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	32	34	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	57	63	parallel
Strand 3	C	213	223	parallel
Strand 4	C	201	207	anti-parallel
Strand 5	C	182	189	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	57	63	parallel
Strand 3	C	213	223	parallel
Strand 4	C	351	353	parallel
Strand 5	C	346	347	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	155	157	anti-parallel
Strand 3	C	124	125	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	141	first strand
Strand 2	C	127	132	anti-parallel
Strand 3	C	265	270	parallel
Strand 4	C	274	280	anti-parallel
Strand 5	C	286	292	anti-parallel
Strand 6	C	243	253	anti-parallel
Strand 7	C	331	338	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	323	325	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	359	360	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	500	first strand
Strand 2	C	506	508	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	590	first strand
Strand 2	C	559	565	parallel
Strand 3	C	519	524	parallel
Strand 4	C	615	619	anti-parallel
Strand 5	C	625	629	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	32	34	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	57	63	parallel
Strand 3	D	213	223	parallel
Strand 4	D	201	207	anti-parallel
Strand 5	D	182	189	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	57	63	parallel
Strand 3	D	213	223	parallel
Strand 4	D	351	353	parallel
Strand 5	D	346	347	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	155	157	anti-parallel
Strand 3	D	124	125	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	141	first strand
Strand 2	D	127	132	anti-parallel
Strand 3	D	266	270	parallel
Strand 4	D	274	280	anti-parallel
Strand 5	D	286	292	anti-parallel
Strand 6	D	241	253	anti-parallel
Strand 7	D	331	341	anti-parallel
Strand 8	D	359	360	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	323	325	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	500	first strand
Strand 2	D	506	508	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	590	first strand
Strand 2	D	559	565	parallel
Strand 3	D	519	524	parallel
Strand 4	D	615	619	anti-parallel
Strand 5	D	625	629	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJ0