Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YJ2 entry

There are 5 chains in PDB entry 7YJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 45PRO 546
E
 LEU 10GLN 47
D
 ASN 11TYR 153
C
 ALA 9MET 56
A
 ASP 51LEU 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 7YJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
67 95Right-handed alpha
Helix 2
AA2
B
120 126Right-handed alpha
Helix 3
AA3
B
127 130Right-handed 310
Helix 4
AA4
B
177 181Right-handed 310
Helix 5
AA5
B
191 199Right-handed alpha
Helix 6
AA6
B
213 228Right-handed alpha
Helix 7
AA7
B
237 244Right-handed alpha
Helix 8
AA8
B
263 272Right-handed alpha
Helix 9
AA9
B
284 294Right-handed alpha
Helix 10
AB1
B
326 335Right-handed alpha
Helix 11
AB2
B
358 363Right-handed alpha
Helix 12
AB3
B
366 370Right-handed 310
Helix 13
AB4
B
391 402Right-handed alpha
Helix 14
AB5
B
402 408Right-handed alpha
Helix 15
AB6
B
412 427Right-handed alpha
Helix 16
AB7
B
433 457Right-handed alpha
Helix 17
AB8
B
475 488Right-handed alpha
Helix 18
AB9
B
497 501Right-handed 310
Helix 19
AC1
B
517 536Right-handed alpha
Helix 20
AC2
E
11 18Right-handed alpha
Helix 21
AC3
E
21 26Right-handed alpha
Helix 22
AC4
E
26 39Right-handed alpha
Helix 23
AC5
D
15 19Right-handed 310
Helix 24
AC6
D
21 37Right-handed alpha
Helix 25
AC7
D
44 66Right-handed alpha
Helix 26
AC8
D
84 89Right-handed alpha
Helix 27
AC9
D
90 93Right-handed 310
Helix 28
AD1
D
96 116Right-handed alpha
Helix 29
AD2
D
123 136Right-handed alpha
Helix 30
AD3
D
139 143Right-handed 310
Helix 31
AD4
D
146 150Right-handed 310
Helix 32
AD5
C
10 24Right-handed alpha
Helix 33
AD6
C
30 50Right-handed alpha
Helix 34
AD7
C
50 55Right-handed alpha
Helix 35
AD8
A
56 64Right-handed alpha
Helix 36
AD9
A
114 129Right-handed alpha
Helix 37
AE1
A
142 156Right-handed alpha
Helix 38
AE2
A
168 175Right-handed alpha
Helix 39
AE3
A
176 178Right-handed 310
Helix 40
AE4
A
192 202Right-handed alpha
Helix 41
AE5
A
213 227Right-handed alpha
Helix 42
AE6
A
233 237Right-handed 310
Helix 43
AE7
A
256 268Right-handed alpha
Helix 44
AE8
A
288 294Right-handed alpha
Helix 45
AE9
A
296 300Right-handed 310
Helix 46
AF1
A
321 326Right-handed alpha
Helix 47
AF2
A
327 330Right-handed 310
Helix 48
AF3
A
332 337Right-handed alpha
Helix 49
AF4
A
342 359Right-handed alpha
Helix 50
AF5
A
361 369Right-handed alpha
Helix 51
AF6
A
369 374Right-handed alpha
Helix 52
AF7
A
404 420Right-handed alpha
Helix 53
AF8
A
453 469Right-handed alpha
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There are 9 sheets in PDB entry 7YJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
54 55anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
462 463anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 152first strand
Strand 2
B
161 172anti-parallel
Strand 3
B
491 492parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
386 390anti-parallel
Strand 3
B
372 376anti-parallel
Strand 4
B
340 344parallel
Strand 5
B
310 315parallel
Strand 6
B
255 259parallel
Strand 7
B
276 280parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 318first strand
Strand 2
B
323 324anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 472first strand
Strand 2
B
507 511anti-parallel
Strand 3
B
494 496anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
92 95anti-parallel
Strand 3
A
98 102anti-parallel
Strand 4
A
424 425parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
316 320anti-parallel
Strand 3
A
302 306anti-parallel
Strand 4
A
270 274parallel
Strand 5
A
240 244parallel
Strand 6
A
184 188parallel
Strand 7
A
205 209parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 386first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
444 447anti-parallel
Strand 4
A
427 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il