Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YJB entry

There is 1 chain in PDB entry 7YJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 12VAL 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7YJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 48Right-handed alpha
Helix 2
AA2
A
53 67Right-handed alpha
Helix 3
AA3
A
77 84Right-handed alpha
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
94 122Right-handed alpha
Helix 6
AA6
A
124 128Right-handed 310
Helix 7
AA7
A
143 153Right-handed alpha
Helix 8
AA8
A
169 184Right-handed alpha
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
274 295Right-handed alpha
Helix 12
AB3
A
316 320Right-handed 310
Helix 13
AB4
A
328 339Right-handed alpha
Helix 14
AB5
A
346 357Right-handed alpha
Helix 15
AB6
A
359 361Right-handed 310
Helix 16
AB7
A
362 378Right-handed alpha
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There are 3 sheets in PDB entry 7YJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
130 135parallel
Strand 3
A
189 196parallel
Strand 4
A
222 229anti-parallel
Strand 5
A
22 29anti-parallel
Strand 6
A
241 250anti-parallel
Strand 7
A
400 408anti-parallel
Strand 8
A
389 396anti-parallel
Strand 9
A
321 324parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
71 73anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
266 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il