Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YJJ entry

There are 4 chains in PDB entry 7YJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 405	TYR 902
C	SER 405	TYR 902
D	SER 405	TYR 902
E	SER 405	TYR 902

There are 80 helices in PDB entry 7YJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	433	437	Right-handed 310
Helix 2	AA2	B	457	468	Right-handed alpha
Helix 3	AA3	B	468	474	Right-handed alpha
Helix 4	AA4	B	481	499	Right-handed alpha
Helix 5	AA5	B	499	511	Right-handed alpha
Helix 6	AA6	B	514	521	Right-handed alpha
Helix 7	AA7	B	523	534	Right-handed alpha
Helix 8	AA8	B	535	539	Right-handed 310
Helix 9	AA9	B	577	582	Right-handed alpha
Helix 10	AB1	B	587	591	Right-handed 310
Helix 11	AB2	B	602	617	Right-handed alpha
Helix 12	AB3	B	632	640	Right-handed alpha
Helix 13	AB4	B	652	659	Right-handed alpha
Helix 14	AB5	B	687	700	Right-handed alpha
Helix 15	AB6	B	716	718	Right-handed 310
Helix 16	AB7	B	719	734	Right-handed alpha
Helix 17	AB8	B	751	769	Right-handed alpha
Helix 18	AB9	B	824	829	Right-handed alpha
Helix 19	AC1	B	875	877	Right-handed 310
Helix 20	AC2	B	887	892	Right-handed alpha
Helix 21	AC3	C	433	437	Right-handed 310
Helix 22	AC4	C	457	468	Right-handed alpha
Helix 23	AC5	C	468	474	Right-handed alpha
Helix 24	AC6	C	481	499	Right-handed alpha
Helix 25	AC7	C	499	511	Right-handed alpha
Helix 26	AC8	C	514	521	Right-handed alpha
Helix 27	AC9	C	523	534	Right-handed alpha
Helix 28	AD1	C	535	539	Right-handed 310
Helix 29	AD2	C	577	582	Right-handed alpha
Helix 30	AD3	C	587	591	Right-handed 310
Helix 31	AD4	C	602	617	Right-handed alpha
Helix 32	AD5	C	632	640	Right-handed alpha
Helix 33	AD6	C	652	659	Right-handed alpha
Helix 34	AD7	C	687	700	Right-handed alpha
Helix 35	AD8	C	716	718	Right-handed 310
Helix 36	AD9	C	719	734	Right-handed alpha
Helix 37	AE1	C	751	769	Right-handed alpha
Helix 38	AE2	C	824	829	Right-handed alpha
Helix 39	AE3	C	875	877	Right-handed 310
Helix 40	AE4	C	887	892	Right-handed alpha
Helix 41	AE5	D	433	437	Right-handed 310
Helix 42	AE6	D	457	468	Right-handed alpha
Helix 43	AE7	D	468	474	Right-handed alpha
Helix 44	AE8	D	481	499	Right-handed alpha
Helix 45	AE9	D	499	511	Right-handed alpha
Helix 46	AF1	D	514	521	Right-handed alpha
Helix 47	AF2	D	523	534	Right-handed alpha
Helix 48	AF3	D	535	539	Right-handed 310
Helix 49	AF4	D	577	582	Right-handed alpha
Helix 50	AF5	D	587	591	Right-handed 310
Helix 51	AF6	D	602	617	Right-handed alpha
Helix 52	AF7	D	632	640	Right-handed alpha
Helix 53	AF8	D	652	659	Right-handed alpha
Helix 54	AF9	D	687	700	Right-handed alpha
Helix 55	AG1	D	716	718	Right-handed 310
Helix 56	AG2	D	719	734	Right-handed alpha
Helix 57	AG3	D	751	769	Right-handed alpha
Helix 58	AG4	D	824	829	Right-handed alpha
Helix 59	AG5	D	875	877	Right-handed 310
Helix 60	AG6	D	887	892	Right-handed alpha
Helix 61	AG7	E	433	437	Right-handed 310
Helix 62	AG8	E	457	468	Right-handed alpha
Helix 63	AG9	E	468	474	Right-handed alpha
Helix 64	AH1	E	481	499	Right-handed alpha
Helix 65	AH2	E	499	511	Right-handed alpha
Helix 66	AH3	E	514	521	Right-handed alpha
Helix 67	AH4	E	523	534	Right-handed alpha
Helix 68	AH5	E	535	539	Right-handed 310
Helix 69	AH6	E	577	582	Right-handed alpha
Helix 70	AH7	E	587	591	Right-handed 310
Helix 71	AH8	E	602	617	Right-handed alpha
Helix 72	AH9	E	632	640	Right-handed alpha
Helix 73	AI1	E	652	659	Right-handed alpha
Helix 74	AI2	E	687	700	Right-handed alpha
Helix 75	AI3	E	716	718	Right-handed 310
Helix 76	AI4	E	719	734	Right-handed alpha
Helix 77	AI5	E	751	769	Right-handed alpha
Helix 78	AI6	E	824	829	Right-handed alpha
Helix 79	AI7	E	875	877	Right-handed 310
Helix 80	AI8	E	887	892	Right-handed alpha

There are 28 sheets in PDB entry 7YJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	413	first strand
Strand 2	B	416	418	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	442	first strand
Strand 2	B	449	453	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	901	902	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	562	first strand
Strand 2	B	894	896	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	625	first strand
Strand 2	B	594	597	parallel
Strand 3	B	569	570	parallel
Strand 4	B	647	650	parallel
Strand 5	B	671	674	parallel
Strand 6	B	879	880	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	682	first strand
Strand 2	B	837	839	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	859	first strand
Strand 2	C	898	899	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	898	899	first strand
Strand 2	C	858	859	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	413	first strand
Strand 2	C	416	418	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	442	first strand
Strand 2	C	449	453	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	555	first strand
Strand 2	C	901	902	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	562	first strand
Strand 2	C	894	896	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	625	first strand
Strand 2	C	594	597	parallel
Strand 3	C	569	570	parallel
Strand 4	C	647	650	parallel
Strand 5	C	671	674	parallel
Strand 6	C	879	880	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	680	682	first strand
Strand 2	C	837	839	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	413	first strand
Strand 2	D	416	418	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	439	442	first strand
Strand 2	D	449	453	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	554	555	first strand
Strand 2	D	901	902	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	560	562	first strand
Strand 2	D	894	896	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	625	first strand
Strand 2	D	594	597	parallel
Strand 3	D	569	570	parallel
Strand 4	D	647	650	parallel
Strand 5	D	671	674	parallel
Strand 6	D	879	880	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	680	682	first strand
Strand 2	D	837	839	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	858	859	first strand
Strand 2	E	898	899	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	898	899	first strand
Strand 2	E	858	859	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	411	413	first strand
Strand 2	E	416	418	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	439	442	first strand
Strand 2	E	449	453	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	554	555	first strand
Strand 2	E	901	902	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	560	562	first strand
Strand 2	E	894	896	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	623	625	first strand
Strand 2	E	594	597	parallel
Strand 3	E	569	570	parallel
Strand 4	E	647	650	parallel
Strand 5	E	671	674	parallel
Strand 6	E	879	880	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	680	682	first strand
Strand 2	E	837	839	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJJ