Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YJK entry

There are 10 chains in PDB entry 7YJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 36	LEU 480
B	MET 1	THR 310
B	SER 312	GLU 475
D	MET 1	ASP 156
C	MET 1	PHE 47
E	GLY 36	LEU 480
F	MET 1	THR 310
F	SER 312	GLU 475
H	MET 1	ASP 156
G	MET 1	PHE 47

There are 88 helices in PDB entry 7YJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	52	Right-handed alpha
Helix 2	AA2	A	67	76	Right-handed alpha
Helix 3	AA3	A	127	137	Right-handed alpha
Helix 4	AA4	A	153	168	Right-handed alpha
Helix 5	AA5	A	177	182	Right-handed 310
Helix 6	AA6	A	185	190	Right-handed alpha
Helix 7	AA7	A	203	213	Right-handed alpha
Helix 8	AA8	A	224	239	Right-handed alpha
Helix 9	AA9	A	265	275	Right-handed alpha
Helix 10	AB1	A	295	301	Right-handed alpha
Helix 11	AB2	A	303	307	Right-handed 310
Helix 12	AB3	A	328	335	Right-handed alpha
Helix 13	AB4	A	349	366	Right-handed alpha
Helix 14	AB5	A	367	382	Right-handed alpha
Helix 15	AB6	A	411	429	Right-handed alpha
Helix 16	AB7	A	460	477	Right-handed alpha
Helix 17	AB8	B	6	29	Right-handed alpha
Helix 18	AB9	B	53	58	Right-handed alpha
Helix 19	AC1	B	60	67	Right-handed 310
Helix 20	AC2	B	120	129	Right-handed alpha
Helix 21	AC3	B	145	160	Right-handed alpha
Helix 22	AC4	B	171	176	Right-handed alpha
Helix 23	AC5	B	177	182	Right-handed alpha
Helix 24	AC6	B	195	205	Right-handed alpha
Helix 25	AC7	B	216	231	Right-handed alpha
Helix 26	AC8	B	258	269	Right-handed alpha
Helix 27	AC9	B	290	295	Right-handed alpha
Helix 28	AD1	B	298	302	Right-handed 310
Helix 29	AD2	B	323	334	Right-handed alpha
Helix 30	AD3	B	334	339	Right-handed alpha
Helix 31	AD4	B	345	359	Right-handed alpha
Helix 32	AD5	B	365	388	Right-handed alpha
Helix 33	AD6	B	409	421	Right-handed alpha
Helix 34	AD7	B	449	468	Right-handed alpha
Helix 35	AD8	D	15	23	Right-handed 310
Helix 36	AD9	D	25	45	Right-handed alpha
Helix 37	AE1	D	48	69	Right-handed alpha
Helix 38	AE2	D	76	80	Right-handed 310
Helix 39	AE3	D	87	92	Right-handed alpha
Helix 40	AE4	D	93	96	Right-handed 310
Helix 41	AE5	D	99	119	Right-handed alpha
Helix 42	AE6	D	126	141	Right-handed alpha
Helix 43	AE7	C	2	15	Right-handed alpha
Helix 44	AE8	C	21	46	Right-handed alpha
Helix 45	AE9	E	37	52	Right-handed alpha
Helix 46	AF1	E	67	76	Right-handed alpha
Helix 47	AF2	E	127	137	Right-handed alpha
Helix 48	AF3	E	153	168	Right-handed alpha
Helix 49	AF4	E	177	182	Right-handed 310
Helix 50	AF5	E	185	190	Right-handed alpha
Helix 51	AF6	E	203	213	Right-handed alpha
Helix 52	AF7	E	224	239	Right-handed alpha
Helix 53	AF8	E	265	275	Right-handed alpha
Helix 54	AF9	E	295	301	Right-handed alpha
Helix 55	AG1	E	303	307	Right-handed 310
Helix 56	AG2	E	328	335	Right-handed alpha
Helix 57	AG3	E	349	366	Right-handed alpha
Helix 58	AG4	E	367	382	Right-handed alpha
Helix 59	AG5	E	411	429	Right-handed alpha
Helix 60	AG6	E	460	477	Right-handed alpha
Helix 61	AG7	F	6	29	Right-handed alpha
Helix 62	AG8	F	53	58	Right-handed alpha
Helix 63	AG9	F	60	67	Right-handed 310
Helix 64	AH1	F	120	129	Right-handed alpha
Helix 65	AH2	F	145	160	Right-handed alpha
Helix 66	AH3	F	171	176	Right-handed alpha
Helix 67	AH4	F	177	182	Right-handed alpha
Helix 68	AH5	F	195	205	Right-handed alpha
Helix 69	AH6	F	216	231	Right-handed alpha
Helix 70	AH7	F	258	269	Right-handed alpha
Helix 71	AH8	F	290	295	Right-handed alpha
Helix 72	AH9	F	298	302	Right-handed 310
Helix 73	AI1	F	323	334	Right-handed alpha
Helix 74	AI2	F	334	339	Right-handed alpha
Helix 75	AI3	F	345	359	Right-handed alpha
Helix 76	AI4	F	365	388	Right-handed alpha
Helix 77	AI5	F	409	421	Right-handed alpha
Helix 78	AI6	F	449	468	Right-handed alpha
Helix 79	AI7	H	15	23	Right-handed 310
Helix 80	AI8	H	25	45	Right-handed alpha
Helix 81	AI9	H	48	69	Right-handed alpha
Helix 82	AJ1	H	76	80	Right-handed 310
Helix 83	AJ2	H	87	92	Right-handed alpha
Helix 84	AJ3	H	93	96	Right-handed 310
Helix 85	AJ4	H	99	119	Right-handed alpha
Helix 86	AJ5	H	126	141	Right-handed alpha
Helix 87	AJ6	G	2	15	Right-handed alpha
Helix 88	AJ7	G	21	46	Right-handed alpha

There are 18 sheets in PDB entry 7YJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	103	106	anti-parallel
Strand 3	A	109	112	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	175	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	309	313	anti-parallel
Strand 4	A	277	281	parallel
Strand 5	A	247	252	parallel
Strand 6	A	195	197	parallel
Strand 7	A	216	218	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	404	405	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	436	first strand
Strand 2	A	451	452	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	D	5	8	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	102	104	anti-parallel
Strand 3	B	423	424	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	94	99	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	167	first strand
Strand 2	B	318	322	anti-parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	272	277	parallel
Strand 5	B	243	245	parallel
Strand 6	B	187	191	parallel
Strand 7	B	208	212	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	404	first strand
Strand 2	B	439	443	anti-parallel
Strand 3	B	426	428	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	97	first strand
Strand 2	E	103	106	anti-parallel
Strand 3	E	109	112	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	175	first strand
Strand 2	E	323	327	anti-parallel
Strand 3	E	309	313	anti-parallel
Strand 4	E	277	281	parallel
Strand 5	E	247	252	parallel
Strand 6	E	195	197	parallel
Strand 7	E	216	218	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	391	first strand
Strand 2	E	404	405	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	435	436	first strand
Strand 2	E	451	452	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	5	first strand
Strand 2	H	5	8	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	79	first strand
Strand 2	F	102	104	anti-parallel
Strand 3	F	423	424	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	85	first strand
Strand 2	F	94	99	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	167	first strand
Strand 2	F	318	322	anti-parallel
Strand 3	F	304	308	anti-parallel
Strand 4	F	272	277	parallel
Strand 5	F	243	245	parallel
Strand 6	F	187	191	parallel
Strand 7	F	208	212	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	400	404	first strand
Strand 2	F	439	443	anti-parallel
Strand 3	F	426	428	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJK