Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YJM entry

There are 5 chains in PDB entry 7YJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 63	LEU 480
B	MET 1	GLU 475
D	MET 1	ASP 156
E	GLY 36	ARG 62
C	MET 1	SER 48

There are 44 helices in PDB entry 7YJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	73	Right-handed alpha
Helix 2	AA2	A	125	140	Right-handed alpha
Helix 3	AA3	A	154	168	Right-handed alpha
Helix 4	AA4	A	178	182	Right-handed 310
Helix 5	AA5	A	203	213	Right-handed alpha
Helix 6	AA6	A	224	239	Right-handed alpha
Helix 7	AA7	A	266	271	Right-handed alpha
Helix 8	AA8	A	295	300	Right-handed alpha
Helix 9	AA9	A	328	333	Right-handed alpha
Helix 10	AB1	A	349	366	Right-handed alpha
Helix 11	AB2	A	367	378	Right-handed alpha
Helix 12	AB3	A	411	426	Right-handed alpha
Helix 13	AB4	A	426	431	Right-handed alpha
Helix 14	AB5	A	468	477	Right-handed alpha
Helix 15	AB6	B	7	9	Right-handed 310
Helix 16	AB7	B	12	22	Right-handed alpha
Helix 17	AB8	B	120	127	Right-handed alpha
Helix 18	AB9	B	127	132	Right-handed alpha
Helix 19	AC1	B	145	150	Right-handed alpha
Helix 20	AC2	B	150	160	Right-handed alpha
Helix 21	AC3	B	171	176	Right-handed alpha
Helix 22	AC4	B	177	182	Right-handed alpha
Helix 23	AC5	B	195	203	Right-handed alpha
Helix 24	AC6	B	216	231	Right-handed alpha
Helix 25	AC7	B	258	269	Right-handed alpha
Helix 26	AC8	B	290	295	Right-handed alpha
Helix 27	AC9	B	323	334	Right-handed alpha
Helix 28	AD1	B	334	339	Right-handed alpha
Helix 29	AD2	B	344	359	Right-handed alpha
Helix 30	AD3	B	365	387	Right-handed alpha
Helix 31	AD4	B	409	420	Right-handed alpha
Helix 32	AD5	B	449	468	Right-handed alpha
Helix 33	AD6	D	29	45	Right-handed alpha
Helix 34	AD7	D	48	54	Right-handed alpha
Helix 35	AD8	D	54	69	Right-handed alpha
Helix 36	AD9	D	76	80	Right-handed 310
Helix 37	AE1	D	87	92	Right-handed alpha
Helix 38	AE2	D	93	96	Right-handed 310
Helix 39	AE3	D	128	140	Right-handed alpha
Helix 40	AE4	D	149	153	Right-handed 310
Helix 41	AE5	E	37	52	Right-handed alpha
Helix 42	AE6	C	2	15	Right-handed alpha
Helix 43	AE7	C	21	30	Right-handed alpha
Helix 44	AE8	C	36	44	Right-handed alpha

There are 10 sheets in PDB entry 7YJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	103	106	anti-parallel
Strand 3	A	109	113	anti-parallel
Strand 4	A	432	433	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	B	70	71	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	175	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	309	313	anti-parallel
Strand 4	A	278	281	parallel
Strand 5	A	247	252	parallel
Strand 6	A	195	197	parallel
Strand 7	A	216	218	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	400	405	anti-parallel
Strand 3	A	450	454	anti-parallel
Strand 4	A	435	436	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	D	5	8	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	102	104	anti-parallel
Strand 3	B	423	424	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	94	95	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	167	first strand
Strand 2	B	318	322	anti-parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	272	277	parallel
Strand 5	B	241	245	parallel
Strand 6	B	186	191	parallel
Strand 7	B	208	212	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	255	256	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	439	441	anti-parallel
Strand 3	B	426	428	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJM