Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YJS entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 7YJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 219SER 284
A
 ALA 286ARG 541
B
 THR 219SER 284
B
 ALA 286ARG 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7YJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 257Right-handed 310
Helix 2
AA2
A
265 269Right-handed 310
Helix 3
AA3
A
284 294Right-handed alpha
Helix 4
AA4
A
296 301Right-handed alpha
Helix 5
AA5
A
305 309Right-handed 310
Helix 6
AA6
A
311 319Right-handed alpha
Helix 7
AA7
A
340 342Right-handed 310
Helix 8
AA8
A
365 371Right-handed 310
Helix 9
AA9
A
373 378Right-handed alpha
Helix 10
AB1
A
398 403Right-handed 310
Helix 11
AB2
A
404 408Right-handed 310
Helix 12
AB3
A
423 451Right-handed alpha
Helix 13
AB4
A
472 474Right-handed 310
Helix 14
AB5
A
481 485Right-handed 310
Helix 15
AB6
A
486 490Right-handed 310
Helix 16
AB7
A
500 503Right-handed 310
Helix 17
AB8
A
517 526Right-handed alpha
Helix 18
AB9
A
530 534Right-handed 310
Helix 19
AC1
B
249 257Right-handed 310
Helix 20
AC2
B
265 269Right-handed 310
Helix 21
AC3
B
284 292Right-handed alpha
Helix 22
AC4
B
296 301Right-handed alpha
Helix 23
AC5
B
303 309Right-handed 310
Helix 24
AC6
B
311 319Right-handed alpha
Helix 25
AC7
B
340 342Right-handed 310
Helix 26
AC8
B
365 371Right-handed 310
Helix 27
AC9
B
372 380Right-handed alpha
Helix 28
AD1
B
398 403Right-handed 310
Helix 29
AD2
B
404 408Right-handed 310
Helix 30
AD3
B
418 422Right-handed 310
Helix 31
AD4
B
424 451Right-handed alpha
Helix 32
AD5
B
472 474Right-handed 310
Helix 33
AD6
B
481 485Right-handed 310
Helix 34
AD7
B
486 489Right-handed 310
Helix 35
AD8
B
517 526Right-handed alpha
Helix 36
AD9
B
530 534Right-handed 310
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There are 8 sheets in PDB entry 7YJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
528 529anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
494 498anti-parallel
Strand 3
A
457 464anti-parallel
Strand 4
A
238 245parallel
Strand 5
A
385 390parallel
Strand 6
A
322 327parallel
Strand 7
A
344 346parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
513 514parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
476 477anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
528 529anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 274first strand
Strand 2
B
494 498anti-parallel
Strand 3
B
457 463anti-parallel
Strand 4
B
238 244parallel
Strand 5
B
384 390parallel
Strand 6
B
321 327parallel
Strand 7
B
344 346parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 492first strand
Strand 2
B
278 279anti-parallel
Strand 3
B
513 514parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 470first strand
Strand 2
B
476 477anti-parallel
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