Analysis of interatomic Contacts of Structural Units in PDB entry:
7YJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YJW entry

There are 2 chains in PDB entry 7YJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 30PHE 330
B
 GLY 30PHE 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7YJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 91Right-handed 310
Helix 2
AA2
A
108 114Right-handed 310
Helix 3
AA3
A
131 137Right-handed 310
Helix 4
AA4
A
154 160Right-handed 310
Helix 5
AA5
A
177 184Right-handed 310
Helix 6
AA6
A
200 206Right-handed 310
Helix 7
AA7
A
223 229Right-handed 310
Helix 8
AA8
A
246 252Right-handed 310
Helix 9
AA9
A
269 275Right-handed 310
Helix 10
AB1
A
292 298Right-handed 310
Helix 11
AB2
A
312 323Right-handed alpha
Helix 12
AB3
B
35 41Right-handed alpha
Helix 13
AB4
B
65 69Right-handed 310
Helix 14
AB5
B
85 89Right-handed 310
Helix 15
AB6
B
131 137Right-handed 310
Helix 16
AB7
B
154 160Right-handed 310
Helix 17
AB8
B
177 184Right-handed 310
Helix 18
AB9
B
200 206Right-handed 310
Helix 19
AC1
B
223 229Right-handed 310
Helix 20
AC2
B
248 252Right-handed 310
Helix 21
AC3
B
269 275Right-handed 310
Helix 22
AC4
B
292 298Right-handed 310
Helix 23
AC5
B
312 323Right-handed alpha
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There are 2 sheets in PDB entry 7YJW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
96 98parallel
Strand 3
A
119 121parallel
Strand 4
A
142 144parallel
Strand 5
A
165 167parallel
Strand 6
A
188 190parallel
Strand 7
A
211 213parallel
Strand 8
A
234 236parallel
Strand 9
A
257 259parallel
Strand 10
A
280 282parallel
Strand 11
A
303 305parallel
Strand 12
A
327 329parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
96 98parallel
Strand 3
B
119 121parallel
Strand 4
B
142 144parallel
Strand 5
B
165 167parallel
Strand 6
B
188 190parallel
Strand 7
B
211 213parallel
Strand 8
B
234 236parallel
Strand 9
B
257 259parallel
Strand 10
B
280 282parallel
Strand 11
B
303 305parallel
Strand 12
B
327 329parallel
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