Analysis of interatomic Contacts of Structural Units in PDB entry:
7YKN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YKN entry

There is 1 chain in PDB entry 7YKN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2LEU 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7YKN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 41Right-handed alpha
Helix 2
AA2
A
45 66Right-handed alpha
Helix 3
AA3
A
74 79Right-handed alpha
Helix 4
AA4
A
83 96Right-handed alpha
Helix 5
AA5
A
107 117Right-handed alpha
Helix 6
AA6
A
135 137Right-handed 310
Helix 7
AA7
A
138 143Right-handed alpha
Helix 8
AA8
A
150 163Right-handed alpha
Helix 9
AA9
A
179 183Right-handed 310
Helix 10
AB1
A
188 194Right-handed alpha
Helix 11
AB2
A
205 215Right-handed alpha
Helix 12
AB3
A
232 247Right-handed alpha
Helix 13
AB4
A
247 252Right-handed alpha
Helix 14
AB5
A
273 279Right-handed alpha
Helix 15
AB6
A
283 298Right-handed alpha
Helix 16
AB7
A
303 316Right-handed alpha
Helix 17
AB8
A
316 333Right-handed alpha
Helix 18
AB9
A
345 350Right-handed 310
Helix 19
AC1
A
355 369Right-handed alpha
Helix 20
AC2
A
372 379Right-handed alpha
Helix 21
AC3
A
379 387Right-handed alpha
Helix 22
AC4
A
390 402Right-handed alpha
Helix 23
AC5
A
406 416Right-handed alpha
Helix 24
AC6
A
434 442Right-handed alpha
Helix 25
AC7
A
443 448Right-handed alpha
Helix 26
AC8
A
461 474Right-handed alpha
Helix 27
AC9
A
487 493Right-handed alpha
Helix 28
AD1
A
495 512Right-handed alpha
Helix 29
AD2
A
513 516Right-handed 310
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There are 2 sheets in PDB entry 7YKN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
28 33parallel
Strand 3
A
5 8parallel
Strand 4
A
99 103parallel
Strand 5
A
123 127parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
226 227anti-parallel
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