Analysis of interatomic Contacts of Structural Units in PDB entry:
7YKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YKR entry

There are 4 chains in PDB entry 7YKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 58ASN 1162
D
 VAL 58ASN 1162
B
 VAL 58ASN 1162
C
 VAL 58ASN 1162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are260 helices in PDB entry 7YKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 65Right-handed alpha
Helix 2
AA2
A
71 83Right-handed alpha
Helix 3
AA3
A
97 101Right-handed 310
Helix 4
AA4
A
102 112Right-handed alpha
Helix 5
AA5
A
125 133Right-handed alpha
Helix 6
AA6
A
137 145Right-handed alpha
Helix 7
AA7
A
159 164Right-handed alpha
Helix 8
AA8
A
168 177Right-handed alpha
Helix 9
AA9
A
196 201Right-handed alpha
Helix 10
AB1
A
203 213Right-handed alpha
Helix 11
AB2
A
227 235Right-handed alpha
Helix 12
AB3
A
239 246Right-handed alpha
Helix 13
AB4
A
254 259Right-handed alpha
Helix 14
AB5
A
278 288Right-handed alpha
Helix 15
AB6
A
301 306Right-handed alpha
Helix 16
AB7
A
311 322Right-handed alpha
Helix 17
AB8
A
324 329Right-handed alpha
Helix 18
AB9
A
339 347Right-handed alpha
Helix 19
AC1
A
351 359Right-handed alpha
Helix 20
AC2
A
372 380Right-handed alpha
Helix 21
AC3
A
383 391Right-handed alpha
Helix 22
AC4
A
405 412Right-handed alpha
Helix 23
AC5
A
417 427Right-handed alpha
Helix 24
AC6
A
428 433Right-handed 310
Helix 25
AC7
A
446 454Right-handed alpha
Helix 26
AC8
A
456 466Right-handed alpha
Helix 27
AC9
A
479 487Right-handed alpha
Helix 28
AD1
A
489 498Right-handed alpha
Helix 29
AD2
A
515 523Right-handed alpha
Helix 30
AD3
A
525 535Right-handed alpha
Helix 31
AD4
A
547 555Right-handed alpha
Helix 32
AD5
A
559 568Right-handed alpha
Helix 33
AD6
A
569 573Right-handed 310
Helix 34
AD7
A
581 586Right-handed alpha
Helix 35
AD8
A
591 595Right-handed 310
Helix 36
AD9
A
615 621Right-handed alpha
Helix 37
AE1
A
623 629Right-handed alpha
Helix 38
AE2
A
636 640Right-handed 310
Helix 39
AE3
A
651 656Right-handed alpha
Helix 40
AE4
A
659 668Right-handed alpha
Helix 41
AE5
A
717 727Right-handed alpha
Helix 42
AE6
A
734 748Right-handed alpha
Helix 43
AE7
A
750 764Right-handed alpha
Helix 44
AE8
A
764 775Right-handed alpha
Helix 45
AE9
A
827 842Right-handed alpha
Helix 46
AF1
A
845 853Right-handed alpha
Helix 47
AF2
A
861 877Right-handed alpha
Helix 48
AF3
A
878 881Right-handed 310
Helix 49
AF4
A
888 905Right-handed alpha
Helix 50
AF5
A
906 913Right-handed 310
Helix 51
AF6
A
917 922Right-handed alpha
Helix 52
AF7
A
925 937Right-handed alpha
Helix 53
AF8
A
938 953Right-handed alpha
Helix 54
AF9
A
962 966Right-handed 310
Helix 55
AG1
A
969 977Right-handed alpha
Helix 56
AG2
A
984 989Right-handed alpha
Helix 57
AG3
A
1000 1015Right-handed alpha
Helix 58
AG4
A
1021 1026Right-handed alpha
Helix 59
AG5
A
1031 1036Right-handed alpha
Helix 60
AG6
A
1037 1057Right-handed alpha
Helix 61
AG7
A
1058 1062Right-handed 310
Helix 62
AG8
A
1082 1089Right-handed alpha
Helix 63
AG9
A
1116 1121Right-handed 310
Helix 64
AH1
A
1131 1143Right-handed alpha
Helix 65
AH2
A
1151 1155Right-handed 310
Helix 66
AH3
D
59 65Right-handed alpha
Helix 67
AH4
D
71 83Right-handed alpha
Helix 68
AH5
D
97 101Right-handed 310
Helix 69
AH6
D
102 112Right-handed alpha
Helix 70
AH7
D
125 133Right-handed alpha
Helix 71
AH8
D
137 145Right-handed alpha
Helix 72
AH9
D
159 164Right-handed alpha
Helix 73
AI1
D
168 177Right-handed alpha
Helix 74
AI2
D
196 201Right-handed alpha
Helix 75
AI3
D
203 213Right-handed alpha
Helix 76
AI4
D
227 235Right-handed alpha
Helix 77
AI5
D
239 246Right-handed alpha
Helix 78
AI6
D
254 259Right-handed alpha
Helix 79
AI7
D
278 288Right-handed alpha
Helix 80
AI8
D
301 306Right-handed alpha
Helix 81
AI9
D
311 322Right-handed alpha
Helix 82
AJ1
D
324 329Right-handed alpha
Helix 83
AJ2
D
339 347Right-handed alpha
Helix 84
AJ3
D
351 359Right-handed alpha
Helix 85
AJ4
D
372 380Right-handed alpha
Helix 86
AJ5
D
383 391Right-handed alpha
Helix 87
AJ6
D
405 412Right-handed alpha
Helix 88
AJ7
D
417 427Right-handed alpha
Helix 89
AJ8
D
428 433Right-handed 310
Helix 90
AJ9
D
446 454Right-handed alpha
Helix 91
AK1
D
456 466Right-handed alpha
Helix 92
AK2
D
479 487Right-handed alpha
Helix 93
AK3
D
489 498Right-handed alpha
Helix 94
AK4
D
515 523Right-handed alpha
Helix 95
AK5
D
525 535Right-handed alpha
Helix 96
AK6
D
547 555Right-handed alpha
Helix 97
AK7
D
559 568Right-handed alpha
Helix 98
AK8
D
569 573Right-handed 310
Helix 99
AK9
D
581 586Right-handed alpha
Helix 100
AL1
D
591 595Right-handed 310
Helix 101
AL2
D
615 621Right-handed alpha
Helix 102
AL3
D
623 629Right-handed alpha
Helix 103
AL4
D
636 640Right-handed 310
Helix 104
AL5
D
651 656Right-handed alpha
Helix 105
AL6
D
659 668Right-handed alpha
Helix 106
AL7
D
717 727Right-handed alpha
Helix 107
AL8
D
734 748Right-handed alpha
Helix 108
AL9
D
750 764Right-handed alpha
Helix 109
AM1
D
764 775Right-handed alpha
Helix 110
AM2
D
827 842Right-handed alpha
Helix 111
AM3
D
845 853Right-handed alpha
Helix 112
AM4
D
861 877Right-handed alpha
Helix 113
AM5
D
878 881Right-handed 310
Helix 114
AM6
D
888 905Right-handed alpha
Helix 115
AM7
D
906 913Right-handed 310
Helix 116
AM8
D
917 922Right-handed alpha
Helix 117
AM9
D
925 937Right-handed alpha
Helix 118
AN1
D
938 953Right-handed alpha
Helix 119
AN2
D
962 966Right-handed 310
Helix 120
AN3
D
969 977Right-handed alpha
Helix 121
AN4
D
984 989Right-handed alpha
Helix 122
AN5
D
1000 1015Right-handed alpha
Helix 123
AN6
D
1021 1026Right-handed alpha
Helix 124
AN7
D
1031 1036Right-handed alpha
Helix 125
AN8
D
1037 1057Right-handed alpha
Helix 126
AN9
D
1058 1062Right-handed 310
Helix 127
AO1
D
1082 1089Right-handed alpha
Helix 128
AO2
D
1116 1121Right-handed 310
Helix 129
AO3
D
1131 1143Right-handed alpha
Helix 130
AO4
D
1151 1155Right-handed 310
Helix 131
AO5
B
59 65Right-handed alpha
Helix 132
AO6
B
71 83Right-handed alpha
Helix 133
AO7
B
97 101Right-handed 310
Helix 134
AO8
B
102 112Right-handed alpha
Helix 135
AO9
B
125 133Right-handed alpha
Helix 136
AP1
B
137 145Right-handed alpha
Helix 137
AP2
B
159 164Right-handed alpha
Helix 138
AP3
B
168 177Right-handed alpha
Helix 139
AP4
B
196 201Right-handed alpha
Helix 140
AP5
B
203 213Right-handed alpha
Helix 141
AP6
B
227 235Right-handed alpha
Helix 142
AP7
B
239 246Right-handed alpha
Helix 143
AP8
B
254 259Right-handed alpha
Helix 144
AP9
B
278 288Right-handed alpha
Helix 145
AQ1
B
301 306Right-handed alpha
Helix 146
AQ2
B
311 322Right-handed alpha
Helix 147
AQ3
B
324 329Right-handed alpha
Helix 148
AQ4
B
339 347Right-handed alpha
Helix 149
AQ5
B
351 359Right-handed alpha
Helix 150
AQ6
B
372 380Right-handed alpha
Helix 151
AQ7
B
383 391Right-handed alpha
Helix 152
AQ8
B
405 412Right-handed alpha
Helix 153
AQ9
B
417 427Right-handed alpha
Helix 154
AR1
B
428 433Right-handed 310
Helix 155
AR2
B
446 454Right-handed alpha
Helix 156
AR3
B
456 466Right-handed alpha
Helix 157
AR4
B
479 487Right-handed alpha
Helix 158
AR5
B
489 498Right-handed alpha
Helix 159
AR6
B
515 523Right-handed alpha
Helix 160
AR7
B
525 535Right-handed alpha
Helix 161
AR8
B
547 555Right-handed alpha
Helix 162
AR9
B
559 568Right-handed alpha
Helix 163
AS1
B
569 573Right-handed 310
Helix 164
AS2
B
581 586Right-handed alpha
Helix 165
AS3
B
591 595Right-handed 310
Helix 166
AS4
B
615 621Right-handed alpha
Helix 167
AS5
B
623 629Right-handed alpha
Helix 168
AS6
B
636 640Right-handed 310
Helix 169
AS7
B
651 656Right-handed alpha
Helix 170
AS8
B
659 668Right-handed alpha
Helix 171
AS9
B
717 727Right-handed alpha
Helix 172
AT1
B
734 748Right-handed alpha
Helix 173
AT2
B
750 764Right-handed alpha
Helix 174
AT3
B
764 775Right-handed alpha
Helix 175
AT4
B
827 842Right-handed alpha
Helix 176
AT5
B
845 853Right-handed alpha
Helix 177
AT6
B
861 877Right-handed alpha
Helix 178
AT7
B
878 881Right-handed 310
Helix 179
AT8
B
888 905Right-handed alpha
Helix 180
AT9
B
906 913Right-handed 310
Helix 181
AU1
B
917 922Right-handed alpha
Helix 182
AU2
B
925 937Right-handed alpha
Helix 183
AU3
B
938 953Right-handed alpha
Helix 184
AU4
B
962 966Right-handed 310
Helix 185
AU5
B
969 977Right-handed alpha
Helix 186
AU6
B
984 989Right-handed alpha
Helix 187
AU7
B
1000 1015Right-handed alpha
Helix 188
AU8
B
1021 1026Right-handed alpha
Helix 189
AU9
B
1031 1036Right-handed alpha
Helix 190
AV1
B
1037 1057Right-handed alpha
Helix 191
AV2
B
1058 1062Right-handed 310
Helix 192
AV3
B
1082 1089Right-handed alpha
Helix 193
AV4
B
1116 1121Right-handed 310
Helix 194
AV5
B
1131 1143Right-handed alpha
Helix 195
AV6
B
1151 1155Right-handed 310
Helix 196
AV7
C
59 65Right-handed alpha
Helix 197
AV8
C
71 83Right-handed alpha
Helix 198
AV9
C
97 101Right-handed 310
Helix 199
AW1
C
102 112Right-handed alpha
Helix 200
AW2
C
125 133Right-handed alpha
Helix 201
AW3
C
137 145Right-handed alpha
Helix 202
AW4
C
159 164Right-handed alpha
Helix 203
AW5
C
168 177Right-handed alpha
Helix 204
AW6
C
196 201Right-handed alpha
Helix 205
AW7
C
203 213Right-handed alpha
Helix 206
AW8
C
227 235Right-handed alpha
Helix 207
AW9
C
239 246Right-handed alpha
Helix 208
AX1
C
254 259Right-handed alpha
Helix 209
AX2
C
278 288Right-handed alpha
Helix 210
AX3
C
301 306Right-handed alpha
Helix 211
AX4
C
311 322Right-handed alpha
Helix 212
AX5
C
324 329Right-handed alpha
Helix 213
AX6
C
339 347Right-handed alpha
Helix 214
AX7
C
351 359Right-handed alpha
Helix 215
AX8
C
372 380Right-handed alpha
Helix 216
AX9
C
383 391Right-handed alpha
Helix 217
AY1
C
405 412Right-handed alpha
Helix 218
AY2
C
417 427Right-handed alpha
Helix 219
AY3
C
428 433Right-handed 310
Helix 220
AY4
C
446 454Right-handed alpha
Helix 221
AY5
C
456 466Right-handed alpha
Helix 222
AY6
C
479 487Right-handed alpha
Helix 223
AY7
C
489 498Right-handed alpha
Helix 224
AY8
C
515 523Right-handed alpha
Helix 225
AY9
C
525 535Right-handed alpha
Helix 226
AZ1
C
547 555Right-handed alpha
Helix 227
AZ2
C
559 568Right-handed alpha
Helix 228
AZ3
C
569 573Right-handed 310
Helix 229
AZ4
C
581 586Right-handed alpha
Helix 230
AZ5
C
591 595Right-handed 310
Helix 231
AZ6
C
615 621Right-handed alpha
Helix 232
AZ7
C
623 629Right-handed alpha
Helix 233
AZ8
C
636 640Right-handed 310
Helix 234
AZ9
C
651 656Right-handed alpha
Helix 235
BA1
C
659 668Right-handed alpha
Helix 236
BA2
C
717 727Right-handed alpha
Helix 237
BA3
C
734 748Right-handed alpha
Helix 238
BA4
C
750 764Right-handed alpha
Helix 239
BA5
C
764 775Right-handed alpha
Helix 240
BA6
C
827 842Right-handed alpha
Helix 241
BA7
C
845 853Right-handed alpha
Helix 242
BA8
C
861 877Right-handed alpha
Helix 243
BA9
C
878 881Right-handed 310
Helix 244
BB1
C
888 905Right-handed alpha
Helix 245
BB2
C
906 913Right-handed 310
Helix 246
BB3
C
917 922Right-handed alpha
Helix 247
BB4
C
925 937Right-handed alpha
Helix 248
BB5
C
938 953Right-handed alpha
Helix 249
BB6
C
962 966Right-handed 310
Helix 250
BB7
C
969 977Right-handed alpha
Helix 251
BB8
C
984 989Right-handed alpha
Helix 252
BB9
C
1000 1015Right-handed alpha
Helix 253
BC1
C
1021 1026Right-handed alpha
Helix 254
BC2
C
1031 1036Right-handed alpha
Helix 255
BC3
C
1037 1057Right-handed alpha
Helix 256
BC4
C
1058 1062Right-handed 310
Helix 257
BC5
C
1082 1089Right-handed alpha
Helix 258
BC6
C
1116 1121Right-handed 310
Helix 259
BC7
C
1131 1143Right-handed alpha
Helix 260
BC8
C
1151 1155Right-handed 310
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There are 4 sheets in PDB entry 7YKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 672first strand
Strand 2
A
685 688anti-parallel
Strand 3
A
1069 1072anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
671 672first strand
Strand 2
D
685 688anti-parallel
Strand 3
D
1069 1072anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
671 672first strand
Strand 2
B
685 688anti-parallel
Strand 3
B
1069 1072anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
671 672first strand
Strand 2
C
685 688anti-parallel
Strand 3
C
1069 1072anti-parallel
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