Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 7YL3 entry
There are 12 chains in PDB entry 7YL3
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
C
|
LYS 1 | THR 36 |
E
|
THR 9 | THR 36 |
I
|
LYS 1 | THR 36 |
K
|
THR 9 | THR 36 |
A
|
LYS 1 | THR 36 |
F
|
THR 9 | THR 36 |
J
|
LYS 1 | THR 36 |
H
|
THR 9 | THR 36 |
B
|
LYS 1 | THR 36 |
G
|
THR 9 | THR 36 |
L
|
LYS 1 | THR 36 |
D
|
THR 9 | THR 36 |
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There are no helices in PDB entry
7YL3
There are
12 sheets in PDB entry 7YL3. Click on sheet of
interest to get list of strands forming it:
AA1,
AA2,
AA3,
AA4,
AA5,
AA6,
AA7,
AA8,
AA9,
AB1,
AB2,
AB3,
There are 3
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 7 |
11 | first strand |
| Strand 2 |
C
| 7 |
11 | parallel |
| Strand 3 |
B
| 7 |
11 | parallel |
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There are 3
strands in AA2 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 17 |
20 | first strand |
| Strand 2 |
C
| 17 |
20 | parallel |
| Strand 3 |
B
| 17 |
20 | parallel |
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There are 3
strands in AA3 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 25 |
27 | first strand |
| Strand 2 |
C
| 25 |
27 | parallel |
| Strand 3 |
B
| 25 |
27 | parallel |
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There are 3
strands in AA4 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 30 |
32 | first strand |
| Strand 2 |
C
| 30 |
32 | parallel |
| Strand 3 |
B
| 30 |
32 | parallel |
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There are 3
strands in AA5 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
F
| 10 |
22 | first strand |
| Strand 2 |
E
| 10 |
22 | parallel |
| Strand 3 |
G
| 10 |
22 | parallel |
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There are 3
strands in AA6 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
F
| 26 |
32 | first strand |
| Strand 2 |
E
| 26 |
32 | parallel |
| Strand 3 |
G
| 26 |
30 | parallel |
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There are 3
strands in AA7 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
J
| 7 |
11 | first strand |
| Strand 2 |
I
| 7 |
11 | parallel |
| Strand 3 |
L
| 7 |
11 | parallel |
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There are 3
strands in AA8 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
J
| 17 |
20 | first strand |
| Strand 2 |
I
| 17 |
20 | parallel |
| Strand 3 |
L
| 17 |
20 | parallel |
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There are 3
strands in AA9 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
J
| 25 |
27 | first strand |
| Strand 2 |
I
| 25 |
27 | parallel |
| Strand 3 |
L
| 25 |
27 | parallel |
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There are 3
strands in AB1 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
J
| 30 |
32 | first strand |
| Strand 2 |
I
| 30 |
32 | parallel |
| Strand 3 |
L
| 30 |
32 | parallel |
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There are 3
strands in AB2 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
K
| 10 |
22 | first strand |
| Strand 2 |
H
| 10 |
22 | parallel |
| Strand 3 |
D
| 10 |
22 | parallel |
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There are 3
strands in AB3 sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
K
| 26 |
32 | first strand |
| Strand 2 |
H
| 26 |
32 | parallel |
| Strand 3 |
D
| 26 |
32 | parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il