Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YLE entry

There is 1 chain in PDB entry 7YLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 24PRO 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7YLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 54Right-handed alpha
Helix 2
AA2
A
63 75Right-handed alpha
Helix 3
AA3
A
90 97Right-handed alpha
Helix 4
AA4
A
119 125Right-handed alpha
Helix 5
AA5
A
126 129Right-handed 310
Helix 6
AA6
A
130 137Right-handed alpha
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
152 165Right-handed alpha
Helix 9
AA9
A
167 171Right-handed 310
Helix 10
AB1
A
179 193Right-handed alpha
Helix 11
AB2
A
205 211Right-handed alpha
Helix 12
AB3
A
222 230Right-handed alpha
Helix 13
AB4
A
252 259Right-handed alpha
Helix 14
AB5
A
259 267Right-handed alpha
Helix 15
AB6
A
272 286Right-handed alpha
Helix 16
AB7
A
289 301Right-handed alpha
Helix 17
AB8
A
301 306Right-handed alpha
Helix 18
AB9
A
307 309Right-handed 310
Helix 19
AC1
A
310 321Right-handed alpha
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There are 5 sheets in PDB entry 7YLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
56 62parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
247 251anti-parallel
Strand 3
A
101 105anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
111 118anti-parallel
Strand 3
A
213 215anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
111 118anti-parallel
Strand 3
A
244 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
173 176parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il