Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YLF entry

There are 2 chains in PDB entry 7YLF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 704TRP 776
A
 GLN 778ASN 850
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 7YLF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
714 716Right-handed 310
Helix 2
AA2
A
717 724Right-handed alpha
Helix 3
AA3
A
724 732Right-handed alpha
Helix 4
AA4
A
738 743Right-handed alpha
Helix 5
AA5
A
753 759Right-handed alpha
Helix 6
AA6
A
768 773Right-handed alpha
Helix 7
AA7
A
774 788Right-handed alpha
Helix 8
AA8
A
813 822Right-handed alpha
Helix 9
AA9
A
831 847Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 7YLF.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 737first strand
Strand 2
A
707 712parallel
Strand 3
A
760 767parallel
Strand 4
A
796 800parallel
Strand 5
A
826 827parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il