Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YLL entry

There is 1 chain in PDB entry 7YLL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3VAL 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7YLL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
45 51Right-handed alpha
Helix 4
AA4
A
58 66Right-handed alpha
Helix 5
AA5
A
75 94Right-handed alpha
Helix 6
AA6
A
115 132Right-handed alpha
Helix 7
AA7
A
142 153Right-handed alpha
Helix 8
AA8
A
166 171Right-handed 310
Helix 9
AA9
A
174 179Right-handed 310
Helix 10
AB1
A
186 191Right-handed alpha
Helix 11
AB2
A
196 201Right-handed alpha
Helix 12
AB3
A
215 224Right-handed alpha
Helix 13
AB4
A
252 275Right-handed alpha
Helix 14
AB5
A
305 319Right-handed alpha
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There are 3 sheets in PDB entry 7YLL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
5 10anti-parallel
Strand 4
A
135 140anti-parallel
Strand 5
A
158 160parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
70 72parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 250first strand
Strand 2
A
326 336anti-parallel
Strand 3
A
278 287anti-parallel
Strand 4
A
292 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il