Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YLM entry

There are 3 chains in PDB entry 7YLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 340SER 767
B
 GLU 378LYS 813
C
 TYR 38LEU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 7YLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
348 351Right-handed 310
Helix 2
AA2
A
352 357Right-handed alpha
Helix 3
AA3
A
359 364Right-handed alpha
Helix 4
AA4
A
364 389Right-handed alpha
Helix 5
AA5
A
396 447Right-handed alpha
Helix 6
AA6
A
452 460Right-handed 310
Helix 7
AA7
A
461 475Right-handed alpha
Helix 8
AA8
A
485 489Right-handed 310
Helix 9
AA9
A
494 503Right-handed alpha
Helix 10
AB1
A
506 511Right-handed alpha
Helix 11
AB2
A
522 526Right-handed 310
Helix 12
AB3
A
569 581Right-handed alpha
Helix 13
AB4
A
582 585Right-handed 310
Helix 14
AB5
A
593 598Right-handed alpha
Helix 15
AB6
A
599 601Right-handed 310
Helix 16
AB7
A
658 755Right-handed alpha
Helix 17
AB8
A
757 762Right-handed alpha
Helix 18
AB9
B
390 425Right-handed alpha
Helix 19
AC1
B
428 487Right-handed alpha
Helix 20
AC2
B
488 493Right-handed alpha
Helix 21
AC3
B
494 498Right-handed 310
Helix 22
AC4
B
514 519Right-handed alpha
Helix 23
AC5
B
537 541Right-handed 310
Helix 24
AC6
B
551 558Right-handed alpha
Helix 25
AC7
B
559 561Right-handed 310
Helix 26
AC8
B
571 579Right-handed alpha
Helix 27
AC9
B
620 625Right-handed 310
Helix 28
AD1
B
702 758Right-handed alpha
Helix 29
AD2
B
763 786Right-handed alpha
Helix 30
AD3
B
787 803Right-handed alpha
Helix 31
AD4
B
804 813Right-handed alpha
Helix 32
AD5
C
43 52Right-handed 310
Helix 33
AD6
C
64 68Right-handed 310
Helix 34
AD7
C
142 148Right-handed alpha
Helix 35
AD8
C
149 155Right-handed 310
Helix 36
AD9
C
206 213Right-handed alpha
Helix 37
AE1
C
231 235Right-handed 310
Helix 38
AE2
C
241 253Right-handed alpha
Helix 39
AE3
C
254 265Right-handed alpha
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There are 4 sheets in PDB entry 7YLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
535 537parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 616first strand
Strand 2
A
619 623anti-parallel
Strand 3
A
635 639anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
661 662first strand
Strand 2
B
670 671anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
203 205anti-parallel
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