Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YLO entry

There are 2 chains in PDB entry 7YLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3TYR 313
B
 VAL 3TYR 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7YLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
30 56Right-handed alpha
Helix 3
AA3
A
68 76Right-handed alpha
Helix 4
AA4
A
113 129Right-handed alpha
Helix 5
AA5
A
143 147Right-handed 310
Helix 6
AA6
A
161 169Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
191 198Right-handed alpha
Helix 9
AA9
A
199 208Right-handed alpha
Helix 10
AB1
A
218 222Right-handed 310
Helix 11
AB2
A
226 231Right-handed alpha
Helix 12
AB3
A
234 238Right-handed 310
Helix 13
AB4
A
267 281Right-handed alpha
Helix 14
AB5
A
283 287Right-handed 310
Helix 15
AB6
A
301 310Right-handed alpha
Helix 16
AB7
B
4 8Right-handed 310
Helix 17
AB8
B
30 56Right-handed alpha
Helix 18
AB9
B
68 76Right-handed alpha
Helix 19
AC1
B
113 129Right-handed alpha
Helix 20
AC2
B
143 147Right-handed 310
Helix 21
AC3
B
161 169Right-handed alpha
Helix 22
AC4
B
174 178Right-handed 310
Helix 23
AC5
B
191 198Right-handed alpha
Helix 24
AC6
B
199 208Right-handed alpha
Helix 25
AC7
B
218 222Right-handed 310
Helix 26
AC8
B
226 231Right-handed alpha
Helix 27
AC9
B
234 238Right-handed 310
Helix 28
AD1
B
267 281Right-handed alpha
Helix 29
AD2
B
283 287Right-handed 310
Helix 30
AD3
B
301 310Right-handed alpha
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There are 8 sheets in PDB entry 7YLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
105 111anti-parallel
Strand 3
A
18 26anti-parallel
Strand 4
A
132 141anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
98 99anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
256 265anti-parallel
Strand 3
A
181 190anti-parallel
Strand 4
A
289 291anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 251first strand
Strand 2
A
256 265anti-parallel
Strand 3
A
181 190anti-parallel
Strand 4
A
295 299anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
105 111anti-parallel
Strand 3
B
18 26anti-parallel
Strand 4
B
132 141anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
98 99anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
256 265anti-parallel
Strand 3
B
181 190anti-parallel
Strand 4
B
289 291anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 251first strand
Strand 2
B
256 265anti-parallel
Strand 3
B
181 190anti-parallel
Strand 4
B
295 299anti-parallel
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