Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YLQ entry

There are 2 chains in PDB entry 7YLQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26HIS 512
B
 ARG 28LEU 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7YLQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 56Right-handed alpha
Helix 2
AA2
A
72 84Right-handed alpha
Helix 3
AA3
A
104 123Right-handed alpha
Helix 4
AA4
A
143 157Right-handed alpha
Helix 5
AA5
A
173 180Right-handed alpha
Helix 6
AA6
A
193 210Right-handed alpha
Helix 7
AA7
A
234 248Right-handed alpha
Helix 8
AA8
A
279 297Right-handed alpha
Helix 9
AA9
A
309 319Right-handed alpha
Helix 10
AB1
A
330 337Right-handed 310
Helix 11
AB2
A
343 352Right-handed alpha
Helix 12
AB3
A
364 375Right-handed alpha
Helix 13
AB4
A
445 450Right-handed alpha
Helix 14
AB5
A
454 458Right-handed 310
Helix 15
AB6
A
469 474Right-handed alpha
Helix 16
AB7
B
49 56Right-handed alpha
Helix 17
AB8
B
72 84Right-handed alpha
Helix 18
AB9
B
104 121Right-handed alpha
Helix 19
AC1
B
143 157Right-handed alpha
Helix 20
AC2
B
173 180Right-handed alpha
Helix 21
AC3
B
193 211Right-handed alpha
Helix 22
AC4
B
234 248Right-handed alpha
Helix 23
AC5
B
279 297Right-handed alpha
Helix 24
AC6
B
309 318Right-handed alpha
Helix 25
AC7
B
329 337Right-handed 310
Helix 26
AC8
B
343 353Right-handed alpha
Helix 27
AC9
B
364 375Right-handed alpha
Helix 28
AD1
B
389 393Right-handed 310
Helix 29
AD2
B
445 451Right-handed alpha
Helix 30
AD3
B
469 474Right-handed alpha
Helix 31
AD4
B
485 489Right-handed 310
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There are 7 sheets in PDB entry 7YLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
87 96anti-parallel
Strand 3
A
29 37parallel
Strand 4
A
127 131parallel
Strand 5
A
161 166parallel
Strand 6
A
182 185parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 224first strand
Strand 2
A
270 277anti-parallel
Strand 3
A
253 257anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 384first strand
Strand 2
A
396 410anti-parallel
Strand 3
A
419 428anti-parallel
Strand 4
A
431 436anti-parallel
Strand 5
A
357 363parallel
Strand 6
A
460 463parallel
Strand 7
A
325 328parallel
Strand 8
A
479 482parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
87 96anti-parallel
Strand 3
B
29 37parallel
Strand 4
B
127 132parallel
Strand 5
B
161 166parallel
Strand 6
B
182 185parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 221first strand
Strand 2
B
271 277anti-parallel
Strand 3
B
253 257anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 363first strand
Strand 2
B
431 436parallel
Strand 3
B
419 427anti-parallel
Strand 4
B
401 410anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
396 398anti-parallel
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