Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YLR entry

There is 1 chain in PDB entry 7YLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ASP 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7YLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 98Right-handed alpha
Helix 2
AA2
A
131 146Right-handed alpha
Helix 3
AA3
A
157 161Right-handed 310
Helix 4
AA4
A
163 172Right-handed alpha
Helix 5
AA5
A
180 184Right-handed alpha
Helix 6
AA6
A
188 196Right-handed alpha
Helix 7
AA7
A
207 221Right-handed alpha
Helix 8
AA8
A
263 272Right-handed alpha
Helix 9
AA9
A
304 311Right-handed alpha
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There are 4 sheets in PDB entry 7YLR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
7 19anti-parallel
Strand 5
A
22 29anti-parallel
Strand 6
A
78 83anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
149 155parallel
Strand 3
A
123 128parallel
Strand 4
A
201 206parallel
Strand 5
A
228 232parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
245 249anti-parallel
Strand 3
A
325 328parallel
Strand 4
A
288 293anti-parallel
Strand 5
A
313 315anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
320 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il