Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YLT entry

There are 2 chains in PDB entry 7YLT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 28	VAL 387
D	ASP 29	ARG 339

There are 68 helices in PDB entry 7YLT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	42	60	Right-handed alpha
Helix 2	AA2	B	78	92	Right-handed alpha
Helix 3	AA3	B	103	118	Right-handed alpha
Helix 4	AA4	B	131	135	Right-handed 310
Helix 5	AA5	B	143	158	Right-handed alpha
Helix 6	AA6	B	170	185	Right-handed alpha
Helix 7	AA7	B	204	214	Right-handed alpha
Helix 8	AA8	B	225	227	Right-handed 310
Helix 9	AA9	B	228	238	Right-handed alpha
Helix 10	AB1	B	247	251	Right-handed 310
Helix 11	AB2	B	252	260	Right-handed alpha
Helix 12	AB3	B	261	264	Right-handed 310
Helix 13	AB4	B	271	279	Right-handed 310
Helix 14	AB5	B	284	301	Right-handed alpha
Helix 15	AB6	B	306	329	Right-handed alpha
Helix 16	AB7	B	335	347	Right-handed alpha
Helix 17	AB8	B	370	374	Right-handed 310
Helix 18	AB9	D	42	60	Right-handed alpha
Helix 19	AC1	D	78	93	Right-handed alpha
Helix 20	AC2	D	103	117	Right-handed alpha
Helix 21	AC3	D	131	135	Right-handed 310
Helix 22	AC4	D	143	158	Right-handed alpha
Helix 23	AC5	D	170	185	Right-handed alpha
Helix 24	AC6	D	204	215	Right-handed alpha
Helix 25	AC7	D	225	227	Right-handed 310
Helix 26	AC8	D	228	238	Right-handed alpha
Helix 27	AC9	D	247	251	Right-handed 310
Helix 28	AD1	D	252	260	Right-handed alpha
Helix 29	AD2	D	261	264	Right-handed 310
Helix 30	AD3	D	271	279	Right-handed 310
Helix 31	AD4	D	283	301	Right-handed alpha
Helix 32	AD5	D	307	329	Right-handed alpha
Helix 33	AD6	D	335	347	Right-handed alpha
Helix 34	AD7	D	370	374	Right-handed 310
Helix 35	AD8	C	42	60	Right-handed alpha
Helix 36	AD9	C	78	92	Right-handed alpha
Helix 37	AE1	C	103	118	Right-handed alpha
Helix 38	AE2	C	131	135	Right-handed 310
Helix 39	AE3	C	143	157	Right-handed alpha
Helix 40	AE4	C	170	188	Right-handed alpha
Helix 41	AE5	C	204	215	Right-handed alpha
Helix 42	AE6	C	225	227	Right-handed 310
Helix 43	AE7	C	228	238	Right-handed alpha
Helix 44	AE8	C	247	251	Right-handed 310
Helix 45	AE9	C	252	260	Right-handed alpha
Helix 46	AF1	C	261	264	Right-handed 310
Helix 47	AF2	C	271	279	Right-handed 310
Helix 48	AF3	C	283	300	Right-handed alpha
Helix 49	AF4	C	308	328	Right-handed alpha
Helix 50	AF5	C	335	347	Right-handed alpha
Helix 51	AF6	C	370	374	Right-handed 310
Helix 52	AF7	A	42	60	Right-handed alpha
Helix 53	AF8	A	78	92	Right-handed alpha
Helix 54	AF9	A	103	118	Right-handed alpha
Helix 55	AG1	A	131	135	Right-handed 310
Helix 56	AG2	A	143	158	Right-handed alpha
Helix 57	AG3	A	170	185	Right-handed alpha
Helix 58	AG4	A	204	215	Right-handed alpha
Helix 59	AG5	A	225	227	Right-handed 310
Helix 60	AG6	A	228	238	Right-handed alpha
Helix 61	AG7	A	247	251	Right-handed 310
Helix 62	AG8	A	252	260	Right-handed alpha
Helix 63	AG9	A	261	264	Right-handed 310
Helix 64	AH1	A	271	279	Right-handed 310
Helix 65	AH2	A	284	301	Right-handed alpha
Helix 66	AH3	A	306	328	Right-handed alpha
Helix 67	AH4	A	335	347	Right-handed alpha
Helix 68	AH5	A	370	374	Right-handed 310

There are 19 sheets in PDB entry 7YLT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	36	first strand
Strand 2	B	66	74	parallel
Strand 3	B	62	63	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	137	139	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	197	first strand
Strand 2	B	162	168	parallel
Strand 3	B	218	222	parallel
Strand 4	B	243	245	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	270	first strand
Strand 2	B	375	380	anti-parallel
Strand 3	B	383	386	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	358	359	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	63	first strand
Strand 2	D	66	74	anti-parallel
Strand 3	D	30	36	parallel
Strand 4	D	98	99	parallel
Strand 5	D	121	123	parallel
Strand 6	D	137	139	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	191	first strand
Strand 2	D	162	168	parallel
Strand 3	D	195	197	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	191	first strand
Strand 2	D	162	168	parallel
Strand 3	D	218	222	parallel
Strand 4	D	243	245	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	270	first strand
Strand 2	D	375	380	anti-parallel
Strand 3	D	383	386	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	358	359	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	66	74	anti-parallel
Strand 3	C	30	36	parallel
Strand 4	C	98	99	parallel
Strand 5	C	121	123	parallel
Strand 6	C	137	139	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	162	168	parallel
Strand 3	C	195	197	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	162	168	parallel
Strand 3	C	218	222	parallel
Strand 4	C	243	245	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	270	first strand
Strand 2	C	375	380	anti-parallel
Strand 3	C	383	386	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	358	359	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	66	74	anti-parallel
Strand 3	A	30	36	parallel
Strand 4	A	98	99	parallel
Strand 5	A	121	123	parallel
Strand 6	A	137	139	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	197	first strand
Strand 2	A	162	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	243	245	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	375	379	anti-parallel
Strand 3	A	384	386	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	358	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YLT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLT