Analysis of interatomic Contacts of Structural Units in PDB entry:
7YLZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YLZ entry

There are 2 chains in PDB entry 7YLZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2TYR 611
B
 CYS 2TYR 611
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 7YLZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 27Right-handed alpha
Helix 2
AA2
A
82 93Right-handed alpha
Helix 3
AA3
A
101 114Right-handed alpha
Helix 4
AA4
A
115 120Right-handed 310
Helix 5
AA5
A
163 169Right-handed alpha
Helix 6
AA6
A
178 186Right-handed alpha
Helix 7
AA7
A
232 252Right-handed alpha
Helix 8
AA8
A
265 280Right-handed alpha
Helix 9
AA9
A
281 283Right-handed 310
Helix 10
AB1
A
313 322Right-handed alpha
Helix 11
AB2
A
331 337Right-handed alpha
Helix 12
AB3
A
337 349Right-handed alpha
Helix 13
AB4
A
354 370Right-handed alpha
Helix 14
AB5
A
380 385Right-handed alpha
Helix 15
AB6
A
388 393Right-handed alpha
Helix 16
AB7
A
393 398Right-handed alpha
Helix 17
AB8
A
402 408Right-handed alpha
Helix 18
AB9
A
408 413Right-handed alpha
Helix 19
AC1
A
414 418Right-handed 310
Helix 20
AC2
A
419 427Right-handed alpha
Helix 21
AC3
A
427 442Right-handed alpha
Helix 22
AC4
A
450 466Right-handed alpha
Helix 23
AC5
A
466 482Right-handed alpha
Helix 24
AC6
A
492 502Right-handed alpha
Helix 25
AC7
A
503 508Right-handed alpha
Helix 26
AC8
A
514 521Right-handed alpha
Helix 27
AC9
A
543 558Right-handed alpha
Helix 28
AD1
A
562 567Right-handed 310
Helix 29
AD2
A
569 579Right-handed alpha
Helix 30
AD3
A
586 605Right-handed alpha
Helix 31
AD4
B
17 26Right-handed alpha
Helix 32
AD5
B
27 29Right-handed 310
Helix 33
AD6
B
82 93Right-handed alpha
Helix 34
AD7
B
101 114Right-handed alpha
Helix 35
AD8
B
116 121Right-handed alpha
Helix 36
AD9
B
164 169Right-handed alpha
Helix 37
AE1
B
178 186Right-handed alpha
Helix 38
AE2
B
232 251Right-handed alpha
Helix 39
AE3
B
265 282Right-handed alpha
Helix 40
AE4
B
313 322Right-handed alpha
Helix 41
AE5
B
331 336Right-handed alpha
Helix 42
AE6
B
337 349Right-handed alpha
Helix 43
AE7
B
355 370Right-handed alpha
Helix 44
AE8
B
380 385Right-handed alpha
Helix 45
AE9
B
388 393Right-handed alpha
Helix 46
AF1
B
393 398Right-handed alpha
Helix 47
AF2
B
402 408Right-handed alpha
Helix 48
AF3
B
414 418Right-handed 310
Helix 49
AF4
B
419 427Right-handed alpha
Helix 50
AF5
B
427 442Right-handed alpha
Helix 51
AF6
B
450 466Right-handed alpha
Helix 52
AF7
B
466 481Right-handed alpha
Helix 53
AF8
B
492 502Right-handed alpha
Helix 54
AF9
B
503 508Right-handed alpha
Helix 55
AG1
B
514 521Right-handed alpha
Helix 56
AG2
B
543 559Right-handed alpha
Helix 57
AG3
B
562 567Right-handed 310
Helix 58
AG4
B
569 578Right-handed alpha
Helix 59
AG5
B
586 605Right-handed alpha
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There are 8 sheets in PDB entry 7YLZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
3 9anti-parallel
Strand 4
A
157 161anti-parallel
Strand 5
A
150 154anti-parallel
Strand 6
A
200 202anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
70 80anti-parallel
Strand 3
A
123 131anti-parallel
Strand 4
A
136 141anti-parallel
Strand 5
A
207 211anti-parallel
Strand 6
A
216 220anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
608 609parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
258 261parallel
Strand 3
A
374 376parallel
Strand 4
A
485 487parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
3 9anti-parallel
Strand 4
B
157 161anti-parallel
Strand 5
B
150 154anti-parallel
Strand 6
B
200 202anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
70 80anti-parallel
Strand 3
B
123 131anti-parallel
Strand 4
B
136 141anti-parallel
Strand 5
B
207 212anti-parallel
Strand 6
B
215 220anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
608 609parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
287 290parallel
Strand 3
B
258 261parallel
Strand 4
B
374 376parallel
Strand 5
B
485 487parallel
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