Analysis of interatomic Contacts of Structural Units in PDB entry:
7YM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YM0 entry

There are 2 chains in PDB entry 7YM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33CYS 333
B
 ASP 33CYS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7YM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
57 67Right-handed alpha
Helix 3
AA3
A
101 105Right-handed 310
Helix 4
AA4
A
106 112Right-handed alpha
Helix 5
AA5
A
130 134Right-handed 310
Helix 6
AA6
A
151 156Right-handed 310
Helix 7
AA7
A
159 167Right-handed alpha
Helix 8
AA8
A
183 202Right-handed alpha
Helix 9
AA9
A
212 223Right-handed alpha
Helix 10
AB1
A
231 242Right-handed alpha
Helix 11
AB2
A
265 275Right-handed alpha
Helix 12
AB3
A
290 300Right-handed alpha
Helix 13
AB4
A
309 321Right-handed alpha
Helix 14
AB5
B
34 38Right-handed 310
Helix 15
AB6
B
57 67Right-handed alpha
Helix 16
AB7
B
101 105Right-handed 310
Helix 17
AB8
B
106 112Right-handed alpha
Helix 18
AB9
B
130 134Right-handed 310
Helix 19
AC1
B
151 156Right-handed 310
Helix 20
AC2
B
159 167Right-handed alpha
Helix 21
AC3
B
183 201Right-handed alpha
Helix 22
AC4
B
212 223Right-handed alpha
Helix 23
AC5
B
231 242Right-handed alpha
Helix 24
AC6
B
265 275Right-handed alpha
Helix 25
AC7
B
290 300Right-handed alpha
Helix 26
AC8
B
309 321Right-handed alpha
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There are 6 sheets in PDB entry 7YM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
71 78anti-parallel
Strand 3
A
172 176parallel
Strand 4
A
206 210parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
71 78anti-parallel
Strand 3
A
42 46parallel
Strand 4
A
304 306parallel
Strand 5
A
278 282parallel
Strand 6
A
251 255parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
261 262anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
172 176parallel
Strand 4
B
206 210parallel
Strand 5
B
228 229parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
42 46parallel
Strand 4
B
304 306parallel
Strand 5
B
278 282parallel
Strand 6
B
251 255parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
261 262anti-parallel
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