Analysis of interatomic Contacts of Structural Units in PDB entry:
7YM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YM5 entry

There is 1 chain in PDB entry 7YM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 28ARG 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 7YM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 85Right-handed alpha
Helix 2
AA2
A
99 113Right-handed alpha
Helix 3
AA3
A
122 124Right-handed 310
Helix 4
AA4
A
126 130Right-handed 310
Helix 5
AA5
A
132 147Right-handed alpha
Helix 6
AA6
A
153 166Right-handed alpha
Helix 7
AA7
A
173 178Right-handed alpha
Helix 8
AA8
A
184 198Right-handed alpha
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
266 279Right-handed alpha
Helix 11
AB2
A
289 297Right-handed alpha
Helix 12
AB3
A
304 313Right-handed alpha
Helix 13
AB4
A
323 328Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7YM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
35 36anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
235 237anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
90 95parallel
Strand 3
A
47 52parallel
Strand 4
A
220 222parallel
Strand 5
A
254 261anti-parallel
Strand 6
A
241 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
319 320anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il