Analysis of interatomic Contacts of Structural Units in PDB entry:
7YM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YM7 entry

There are 2 chains in PDB entry 7YM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 23GLN 325
B
 THR 22SER 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7YM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 59Right-handed 310
Helix 2
AA2
A
73 85Right-handed alpha
Helix 3
AA3
A
99 113Right-handed alpha
Helix 4
AA4
A
122 124Right-handed 310
Helix 5
AA5
A
126 130Right-handed 310
Helix 6
AA6
A
132 146Right-handed alpha
Helix 7
AA7
A
153 166Right-handed alpha
Helix 8
AA8
A
168 172Right-handed 310
Helix 9
AA9
A
173 179Right-handed alpha
Helix 10
AB1
A
184 198Right-handed alpha
Helix 11
AB2
A
199 205Right-handed alpha
Helix 12
AB3
A
266 279Right-handed alpha
Helix 13
AB4
A
289 298Right-handed alpha
Helix 14
AB5
A
304 313Right-handed alpha
Helix 15
AB6
B
55 59Right-handed 310
Helix 16
AB7
B
73 85Right-handed alpha
Helix 17
AB8
B
99 113Right-handed alpha
Helix 18
AB9
B
122 124Right-handed 310
Helix 19
AC1
B
126 130Right-handed 310
Helix 20
AC2
B
132 146Right-handed alpha
Helix 21
AC3
B
148 152Right-handed 310
Helix 22
AC4
B
153 166Right-handed alpha
Helix 23
AC5
B
167 172Right-handed 310
Helix 24
AC6
B
173 180Right-handed alpha
Helix 25
AC7
B
183 198Right-handed alpha
Helix 26
AC8
B
198 205Right-handed alpha
Helix 27
AC9
B
266 279Right-handed alpha
Helix 28
AD1
B
289 297Right-handed alpha
Helix 29
AD2
B
305 313Right-handed alpha
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There are 7 sheets in PDB entry 7YM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
235 238anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
90 95parallel
Strand 3
A
47 52parallel
Strand 4
A
219 222parallel
Strand 5
A
251 261anti-parallel
Strand 6
A
241 248anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
319 320anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
34 37anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
235 237anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
90 96parallel
Strand 3
B
47 53parallel
Strand 4
B
219 222parallel
Strand 5
B
255 261anti-parallel
Strand 6
B
241 244anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
319 320anti-parallel
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