Analysis of interatomic Contacts of Structural Units in PDB entry:
7YM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YM8 entry

There are 3 chains in PDB entry 7YM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 14VAL 228
A
 SER 24LEU 341
D
 GLN 1SER 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7YM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
27 33Right-handed alpha
Helix 2
AA2
B
77 82Right-handed alpha
Helix 3
AA3
B
99 113Right-handed alpha
Helix 4
AA4
B
128 133Right-handed alpha
Helix 5
AA5
B
169 184Right-handed alpha
Helix 6
AA6
B
204 225Right-handed alpha
Helix 7
AA7
A
25 53Right-handed alpha
Helix 8
AA8
A
59 79Right-handed alpha
Helix 9
AA9
A
79 90Right-handed alpha
Helix 10
AB1
A
95 129Right-handed alpha
Helix 11
AB2
A
141 159Right-handed alpha
Helix 12
AB3
A
184 211Right-handed alpha
Helix 13
AB4
A
263 286Right-handed alpha
Helix 14
AB5
A
287 296Right-handed alpha
Helix 15
AB6
A
304 326Right-handed alpha
Helix 16
AB7
A
327 329Right-handed 310
Helix 17
AB8
A
330 341Right-handed alpha
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There are 3 sheets in PDB entry 7YM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 58first strand
Strand 2
B
61 67anti-parallel
Strand 3
B
15 20parallel
Strand 4
B
87 93parallel
Strand 5
B
120 126parallel
Strand 6
B
193 197parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
17 22anti-parallel
Strand 3
D
76 82anti-parallel
Strand 4
D
66 71anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
110 115parallel
Strand 3
D
90 95anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
56 58anti-parallel
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