Analysis of interatomic Contacts of Structural Units in PDB entry:
7YM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YM9 entry

There are 2 chains in PDB entry 7YM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 43PHE 299
B
 ASP 43PHE 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7YM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 59Right-handed alpha
Helix 2
AA2
A
104 109Right-handed 310
Helix 3
AA3
A
110 117Right-handed alpha
Helix 4
AA4
A
133 151Right-handed alpha
Helix 5
AA5
A
154 156Right-handed 310
Helix 6
AA6
A
169 174Right-handed alpha
Helix 7
AA7
A
174 182Right-handed alpha
Helix 8
AA8
A
223 231Right-handed alpha
Helix 9
AA9
A
247 251Right-handed 310
Helix 10
AB1
A
253 269Right-handed alpha
Helix 11
AB2
A
271 273Right-handed 310
Helix 12
AB3
A
274 279Right-handed alpha
Helix 13
AB4
B
53 59Right-handed alpha
Helix 14
AB5
B
104 109Right-handed 310
Helix 15
AB6
B
110 117Right-handed alpha
Helix 16
AB7
B
133 151Right-handed alpha
Helix 17
AB8
B
154 156Right-handed 310
Helix 18
AB9
B
169 174Right-handed alpha
Helix 19
AC1
B
174 182Right-handed alpha
Helix 20
AC2
B
223 231Right-handed alpha
Helix 21
AC3
B
247 251Right-handed 310
Helix 22
AC4
B
253 269Right-handed alpha
Helix 23
AC5
B
271 273Right-handed 310
Helix 24
AC6
B
274 279Right-handed alpha
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There are 2 sheets in PDB entry 7YM9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
121 125anti-parallel
Strand 4
A
92 98parallel
Strand 5
A
158 168parallel
Strand 6
A
187 191parallel
Strand 7
A
207 212parallel
Strand 8
A
236 241parallel
Strand 9
A
290 295anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
80 85anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
92 98parallel
Strand 5
B
158 168parallel
Strand 6
B
187 191parallel
Strand 7
B
207 212parallel
Strand 8
B
236 241parallel
Strand 9
B
290 295anti-parallel
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