Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YMB entry

There is 1 chain in PDB entry 7YMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7YMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
17 30Right-handed alpha
Helix 3
AA3
A
40 51Right-handed alpha
Helix 4
AA4
A
71 79Right-handed alpha
Helix 5
AA5
A
98 103Right-handed alpha
Helix 6
AA6
A
103 123Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
140 144Right-handed 310
Helix 9
AA9
A
167 191Right-handed alpha
Helix 10
AB1
A
221 233Right-handed alpha
Helix 11
AB2
A
249 262Right-handed alpha
Helix 12
AB3
A
263 266Right-handed 310
Helix 13
AB4
A
279 290Right-handed alpha
Helix 14
AB5
A
291 294Right-handed 310
Helix 15
AB6
A
306 310Right-handed 310
Helix 16
AB7
A
316 324Right-handed alpha
Helix 17
AB8
A
329 344Right-handed alpha
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There are 2 sheets in PDB entry 7YMB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
33 38parallel
Strand 3
A
9 13parallel
Strand 4
A
82 87parallel
Strand 5
A
128 132parallel
Strand 6
A
197 203parallel
Strand 7
A
269 272parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
243 248parallel
Strand 3
A
275 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il