Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YMF entry

There are 2 chains in PDB entry 7YMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 134GLY 406
B
 ILE 415TYR 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7YMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 152Right-handed alpha
Helix 2
AA2
A
159 165Right-handed alpha
Helix 3
AA3
A
181 185Right-handed 310
Helix 4
AA4
A
187 199Right-handed alpha
Helix 5
AA5
A
204 216Right-handed alpha
Helix 6
AA6
A
229 246Right-handed alpha
Helix 7
AA7
A
275 290Right-handed alpha
Helix 8
AA8
A
305 314Right-handed alpha
Helix 9
AA9
A
323 333Right-handed alpha
Helix 10
AB1
A
348 355Right-handed alpha
Helix 11
AB2
A
357 367Right-handed alpha
Helix 12
AB3
A
386 397Right-handed alpha
Helix 13
AB4
B
423 425Right-handed 310
Helix 14
AB5
B
426 437Right-handed alpha
Helix 15
AB6
B
453 464Right-handed alpha
Helix 16
AB7
B
476 489Right-handed alpha
Helix 17
AB8
B
521 528Right-handed alpha
Helix 18
AB9
B
546 551Right-handed 310
Helix 19
AC1
B
552 563Right-handed alpha
Helix 20
AC2
B
568 576Right-handed alpha
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There are 2 sheets in PDB entry 7YMF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
401 405anti-parallel
Strand 3
A
220 223parallel
Strand 4
A
377 382parallel
Strand 5
A
343 346parallel
Strand 6
A
269 272parallel
Strand 7
A
319 322parallel
Strand 8
A
297 300parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 421first strand
Strand 2
B
540 545parallel
Strand 3
B
512 515parallel
Strand 4
B
444 447parallel
Strand 5
B
494 497parallel
Strand 6
B
468 470parallel
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