Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YMH entry

There are 3 chains in PDB entry 7YMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 25LEU 341
B
 ALA 14VAL 228
D
 SER 17TRP 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7YMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 50Right-handed alpha
Helix 2
AA2
A
59 90Right-handed alpha
Helix 3
AA3
A
96 129Right-handed alpha
Helix 4
AA4
A
145 159Right-handed alpha
Helix 5
AA5
A
160 163Right-handed 310
Helix 6
AA6
A
183 191Right-handed alpha
Helix 7
AA7
A
193 211Right-handed alpha
Helix 8
AA8
A
263 274Right-handed alpha
Helix 9
AA9
A
274 298Right-handed alpha
Helix 10
AB1
A
304 329Right-handed alpha
Helix 11
AB2
A
331 339Right-handed alpha
Helix 12
AB3
B
27 33Right-handed alpha
Helix 13
AB4
B
76 81Right-handed alpha
Helix 14
AB5
B
100 112Right-handed alpha
Helix 15
AB6
B
127 136Right-handed alpha
Helix 16
AB7
B
142 146Right-handed alpha
Helix 17
AB8
B
165 184Right-handed alpha
Helix 18
AB9
B
205 225Right-handed alpha
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There are 4 sheets in PDB entry 7YMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 20first strand
Strand 2
B
61 67parallel
Strand 3
B
53 58anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 93first strand
Strand 2
B
121 126parallel
Strand 3
B
193 196parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 58first strand
Strand 2
D
46 51anti-parallel
Strand 3
D
33 39anti-parallel
Strand 4
D
91 97anti-parallel
Strand 5
D
104 105anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 69first strand
Strand 2
D
78 81anti-parallel
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