Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YMJ entry

There are 2 chains in PDB entry 7YMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 24ILE 343
D
 GLN 3SER 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7YMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 54Right-handed alpha
Helix 2
AA2
A
61 79Right-handed alpha
Helix 3
AA3
A
79 90Right-handed alpha
Helix 4
AA4
A
97 130Right-handed alpha
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
139 159Right-handed alpha
Helix 7
AA7
A
160 164Right-handed 310
Helix 8
AA8
A
181 193Right-handed alpha
Helix 9
AA9
A
193 214Right-handed alpha
Helix 10
AB1
A
220 298Right-handed alpha
Helix 11
AB2
A
307 312Right-handed alpha
Helix 12
AB3
A
313 322Right-handed alpha
Helix 13
AB4
A
324 329Right-handed alpha
Helix 14
AB5
A
331 343Right-handed alpha
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There are 3 sheets in PDB entry 7YMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 9first strand
Strand 2
D
19 27anti-parallel
Strand 3
D
79 85anti-parallel
Strand 4
D
70 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 13first strand
Strand 2
D
117 120parallel
Strand 3
D
93 102anti-parallel
Strand 4
D
32 39anti-parallel
Strand 5
D
49 54anti-parallel
Strand 6
D
60 61anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 13first strand
Strand 2
D
117 120parallel
Strand 3
D
93 102anti-parallel
Strand 4
D
110 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il