Analysis of interatomic Contacts of Structural Units in PDB entry:
7YML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YML entry

There are 24 chains in PDB entry 7YML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ALA 2	GLY 282
M	ALA 2	VAL 305
H	MET 1	GLY 248
A	SER 2	LEU 44
B	ASP 5	PHE 48
D	SER 2	ALA 56
E	ASP 5	PHE 48
F	SER 2	VAL 54
G	LEU 6	PHE 48
I	SER 2	ALA 56
J	ASP 5	PHE 48
K	SER 2	ALA 55
N	LEU 6	PHE 48
O	SER 2	ALA 56
P	LEU 6	PHE 48
Q	SER 2	ALA 56
R	LEU 6	PHE 48
S	SER 2	ALA 56
T	LEU 6	PHE 48
V	SER 2	ALA 56
W	PHE 8	PHE 48
Y	ASP 12	TYR 53
Z	GLU 18	PHE 48
X	SER 2	THR 66

There are 84 helices in PDB entry 7YML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	7	11	Right-handed 310
Helix 2	AA2	L	33	58	Right-handed alpha
Helix 3	AA3	L	71	75	Right-handed 310
Helix 4	AA4	L	80	83	Right-handed 310
Helix 5	AA5	L	84	113	Right-handed alpha
Helix 6	AA6	L	116	134	Right-handed alpha
Helix 7	AA7	L	134	140	Right-handed alpha
Helix 8	AA8	L	142	146	Right-handed 310
Helix 9	AA9	L	152	164	Right-handed alpha
Helix 10	AB1	L	165	166	Right-handed 310
Helix 11	AB2	L	167	170	Right-handed 310
Helix 12	AB3	L	171	200	Right-handed alpha
Helix 13	AB4	L	209	221	Right-handed alpha
Helix 14	AB5	L	226	252	Right-handed alpha
Helix 15	AB6	L	259	264	Right-handed alpha
Helix 16	AB7	L	264	269	Right-handed alpha
Helix 17	AB8	M	26	30	Right-handed 310
Helix 18	AB9	M	37	41	Right-handed 310
Helix 19	AC1	M	54	78	Right-handed alpha
Helix 20	AC2	M	81	88	Right-handed alpha
Helix 21	AC3	M	98	102	Right-handed 310
Helix 22	AC4	M	107	110	Right-handed 310
Helix 23	AC5	M	111	139	Right-handed alpha
Helix 24	AC6	M	143	161	Right-handed alpha
Helix 25	AC7	M	161	168	Right-handed alpha
Helix 26	AC8	M	169	173	Right-handed 310
Helix 27	AC9	M	177	192	Right-handed alpha
Helix 28	AD1	M	194	197	Right-handed 310
Helix 29	AD2	M	198	225	Right-handed alpha
Helix 30	AD3	M	226	229	Right-handed 310
Helix 31	AD4	M	232	239	Right-handed alpha
Helix 32	AD5	M	241	256	Right-handed alpha
Helix 33	AD6	M	263	289	Right-handed alpha
Helix 34	AD7	M	292	300	Right-handed alpha
Helix 35	AD8	H	12	35	Right-handed alpha
Helix 36	AD9	H	76	83	Right-handed alpha
Helix 37	AE1	H	106	111	Right-handed alpha
Helix 38	AE2	H	112	116	Right-handed 310
Helix 39	AE3	H	138	140	Right-handed 310
Helix 40	AE4	H	196	198	Right-handed 310
Helix 41	AE5	H	211	215	Right-handed 310
Helix 42	AE6	H	228	241	Right-handed alpha
Helix 43	AE7	H	241	246	Right-handed alpha
Helix 44	AE8	A	3	10	Right-handed 310
Helix 45	AE9	A	12	37	Right-handed alpha
Helix 46	AF1	B	12	45	Right-handed alpha
Helix 47	AF2	D	3	10	Right-handed 310
Helix 48	AF3	D	12	38	Right-handed alpha
Helix 49	AF4	D	42	52	Right-handed alpha
Helix 50	AF5	E	12	45	Right-handed alpha
Helix 51	AF6	F	3	10	Right-handed 310
Helix 52	AF7	F	12	38	Right-handed alpha
Helix 53	AF8	F	42	52	Right-handed alpha
Helix 54	AF9	G	12	45	Right-handed alpha
Helix 55	AG1	I	3	10	Right-handed 310
Helix 56	AG2	I	12	38	Right-handed alpha
Helix 57	AG3	I	42	51	Right-handed alpha
Helix 58	AG4	J	12	45	Right-handed alpha
Helix 59	AG5	K	3	10	Right-handed 310
Helix 60	AG6	K	12	38	Right-handed alpha
Helix 61	AG7	K	42	52	Right-handed alpha
Helix 62	AG8	N	12	45	Right-handed alpha
Helix 63	AG9	O	3	10	Right-handed 310
Helix 64	AH1	O	12	38	Right-handed alpha
Helix 65	AH2	O	42	52	Right-handed alpha
Helix 66	AH3	P	14	45	Right-handed alpha
Helix 67	AH4	Q	3	10	Right-handed 310
Helix 68	AH5	Q	12	38	Right-handed alpha
Helix 69	AH6	Q	42	52	Right-handed alpha
Helix 70	AH7	R	12	45	Right-handed alpha
Helix 71	AH8	S	3	10	Right-handed 310
Helix 72	AH9	S	12	38	Right-handed alpha
Helix 73	AI1	S	43	51	Right-handed alpha
Helix 74	AI2	T	12	45	Right-handed alpha
Helix 75	AI3	V	3	10	Right-handed 310
Helix 76	AI4	V	12	38	Right-handed alpha
Helix 77	AI5	V	42	52	Right-handed alpha
Helix 78	AI6	W	12	45	Right-handed alpha
Helix 79	AI7	Y	15	38	Right-handed alpha
Helix 80	AI8	Y	39	41	Right-handed 310
Helix 81	AI9	Y	42	52	Right-handed alpha
Helix 82	AJ1	Z	19	45	Right-handed alpha
Helix 83	AJ2	X	14	52	Right-handed alpha
Helix 84	AJ3	X	57	61	Right-handed 310

There are 9 sheets in PDB entry 7YML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	27	first strand
Strand 2	L	30	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	67	first strand
Strand 2	L	149	150	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	14	first strand
Strand 2	H	143	147	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	35	first strand
Strand 2	M	46	47	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	10	11	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	64	first strand
Strand 2	H	72	74	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	101	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	162	172	anti-parallel
Strand 3	H	177	185	anti-parallel
Strand 4	H	190	194	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	162	172	anti-parallel
Strand 3	H	154	156	anti-parallel
Strand 4	H	205	206	parallel
Strand 5	H	199	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YML

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YML