Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YMT entry

There are 3 chains in PDB entry 7YMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 19	LEU 1223
B	VAL 19	LEU 1223
C	VAL 19	LEU 1223

There are 74 helices in PDB entry 7YMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	108	Right-handed 310
Helix 2	AA2	A	218	221	Right-handed 310
Helix 3	AA3	A	222	230	Right-handed alpha
Helix 4	AA4	A	342	351	Right-handed alpha
Helix 5	AA5	A	385	390	Right-handed alpha
Helix 6	AA6	A	395	399	Right-handed 310
Helix 7	AA7	A	410	416	Right-handed alpha
Helix 8	AA8	A	449	456	Right-handed 310
Helix 9	AA9	A	462	468	Right-handed alpha
Helix 10	AB1	A	524	529	Right-handed 310
Helix 11	AB2	A	546	550	Right-handed 310
Helix 12	AB3	A	806	811	Right-handed alpha
Helix 13	AB4	A	814	822	Right-handed alpha
Helix 14	AB5	A	825	854	Right-handed alpha
Helix 15	AB6	A	888	898	Right-handed alpha
Helix 16	AB7	A	908	915	Right-handed alpha
Helix 17	AB8	A	924	928	Right-handed 310
Helix 18	AB9	A	940	959	Right-handed alpha
Helix 19	AC1	A	971	983	Right-handed alpha
Helix 20	AC2	A	988	993	Right-handed alpha
Helix 21	AC3	A	993	1011	Right-handed alpha
Helix 22	AC4	A	1016	1038	Right-handed alpha
Helix 23	AC5	A	1050	1058	Right-handed alpha
Helix 24	AC6	A	1059	1106	Right-handed alpha
Helix 25	AC7	B	49	53	Right-handed 310
Helix 26	AC8	B	103	108	Right-handed 310
Helix 27	AC9	B	209	214	Right-handed alpha
Helix 28	AD1	B	218	221	Right-handed 310
Helix 29	AD2	B	222	230	Right-handed alpha
Helix 30	AD3	B	269	271	Right-handed 310
Helix 31	AD4	B	342	352	Right-handed alpha
Helix 32	AD5	B	385	390	Right-handed alpha
Helix 33	AD6	B	395	399	Right-handed 310
Helix 34	AD7	B	452	456	Right-handed 310
Helix 35	AD8	B	462	468	Right-handed alpha
Helix 36	AD9	B	524	528	Right-handed 310
Helix 37	AE1	B	546	550	Right-handed 310
Helix 38	AE2	B	814	825	Right-handed alpha
Helix 39	AE3	B	825	854	Right-handed alpha
Helix 40	AE4	B	888	897	Right-handed alpha
Helix 41	AE5	B	907	915	Right-handed alpha
Helix 42	AE6	B	925	931	Right-handed alpha
Helix 43	AE7	B	940	958	Right-handed alpha
Helix 44	AE8	B	971	983	Right-handed alpha
Helix 45	AE9	B	986	993	Right-handed alpha
Helix 46	AF1	B	993	1008	Right-handed alpha
Helix 47	AF2	B	1016	1039	Right-handed alpha
Helix 48	AF3	B	1050	1058	Right-handed alpha
Helix 49	AF4	B	1059	1106	Right-handed alpha
Helix 50	AF5	B	1219	1223	Right-handed 310
Helix 51	AF6	C	36	41	Right-handed alpha
Helix 52	AF7	C	222	230	Right-handed alpha
Helix 53	AF8	C	303	307	Right-handed 310
Helix 54	AF9	C	342	352	Right-handed alpha
Helix 55	AG1	C	385	390	Right-handed alpha
Helix 56	AG2	C	430	435	Right-handed 310
Helix 57	AG3	C	450	457	Right-handed 310
Helix 58	AG4	C	462	468	Right-handed alpha
Helix 59	AG5	C	525	530	Right-handed alpha
Helix 60	AG6	C	546	550	Right-handed 310
Helix 61	AG7	C	595	600	Right-handed 310
Helix 62	AG8	C	814	825	Right-handed alpha
Helix 63	AG9	C	826	853	Right-handed alpha
Helix 64	AH1	C	870	874	Right-handed 310
Helix 65	AH2	C	888	898	Right-handed alpha
Helix 66	AH3	C	908	915	Right-handed alpha
Helix 67	AH4	C	940	955	Right-handed alpha
Helix 68	AH5	C	971	983	Right-handed alpha
Helix 69	AH6	C	986	993	Right-handed alpha
Helix 70	AH7	C	993	1011	Right-handed alpha
Helix 71	AH8	C	1016	1042	Right-handed alpha
Helix 72	AH9	C	1050	1058	Right-handed alpha
Helix 73	AI1	C	1059	1106	Right-handed alpha
Helix 74	AI2	C	1198	1200	Right-handed 310

There are 53 sheets in PDB entry 7YMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	75	first strand
Strand 2	A	319	327	anti-parallel
Strand 3	A	333	337	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	96	97	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	168	174	anti-parallel
Strand 5	A	179	189	anti-parallel
Strand 6	A	232	235	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	168	174	anti-parallel
Strand 5	A	179	189	anti-parallel
Strand 6	A	240	241	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	284	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	116	120	anti-parallel
Strand 5	A	314	317	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	137	139	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	A	659	664	anti-parallel
Strand 3	A	669	675	anti-parallel
Strand 4	A	712	715	anti-parallel
Strand 5	A	707	709	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	404	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	568	576	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	419	426	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	497	506	anti-parallel
Strand 3	A	553	561	anti-parallel
Strand 4	A	539	544	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	608	first strand
Strand 2	A	611	620	anti-parallel
Strand 3	A	648	651	anti-parallel
Strand 4	A	638	642	anti-parallel
Strand 5	A	630	632	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	722	723	first strand
Strand 2	A	759	761	parallel
Strand 3	A	735	737	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	769	first strand
Strand 2	B	857	858	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	795	first strand
Strand 2	A	1134	1151	anti-parallel
Strand 3	A	1121	1129	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	933	934	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	858	first strand
Strand 2	C	768	769	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1166	1167	first strand
Strand 2	A	1202	1203	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1170	1174	first strand
Strand 2	A	1184	1188	anti-parallel
Strand 3	A	1195	1196	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	75	first strand
Strand 2	B	319	327	anti-parallel
Strand 3	B	333	337	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	96	97	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	292	294	anti-parallel
Strand 3	B	147	150	anti-parallel
Strand 4	B	167	174	anti-parallel
Strand 5	B	179	189	anti-parallel
Strand 6	B	232	235	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	263	267	anti-parallel
Strand 3	B	252	258	anti-parallel
Strand 4	B	116	120	anti-parallel
Strand 5	B	314	317	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	309	310	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	161	164	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	362	first strand
Strand 2	B	660	664	anti-parallel
Strand 3	B	669	675	anti-parallel
Strand 4	B	712	715	anti-parallel
Strand 5	B	707	709	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	604	608	parallel
Strand 3	B	611	615	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	404	first strand
Strand 2	B	440	446	anti-parallel
Strand 3	B	568	576	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	419	426	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	515	first strand
Strand 2	B	497	506	anti-parallel
Strand 3	B	552	561	anti-parallel
Strand 4	B	539	545	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	650	first strand
Strand 2	B	638	642	anti-parallel
Strand 3	B	630	632	anti-parallel
Strand 4	C	62	63	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	724	first strand
Strand 2	B	758	762	parallel
Strand 3	B	735	738	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	768	769	first strand
Strand 2	C	857	858	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	795	first strand
Strand 2	B	1134	1148	anti-parallel
Strand 3	B	1121	1129	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	802	804	first strand
Strand 2	B	932	934	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1155	1157	first strand
Strand 2	B	1212	1214	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1164	1167	first strand
Strand 2	B	1202	1205	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1170	1174	first strand
Strand 2	B	1184	1188	anti-parallel
Strand 3	B	1194	1195	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	75	first strand
Strand 2	C	319	327	anti-parallel
Strand 3	C	333	337	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	96	97	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	292	296	anti-parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	167	174	anti-parallel
Strand 5	C	179	189	anti-parallel
Strand 6	C	232	235	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	284	first strand
Strand 2	C	263	267	anti-parallel
Strand 3	C	252	258	anti-parallel
Strand 4	C	116	120	anti-parallel
Strand 5	C	316	317	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	133	139	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	161	165	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	298	300	parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	659	664	anti-parallel
Strand 3	C	669	675	anti-parallel
Strand 4	C	712	715	anti-parallel
Strand 5	C	707	709	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	375	first strand
Strand 2	C	603	608	parallel
Strand 3	C	611	612	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	375	first strand
Strand 2	C	603	608	parallel
Strand 3	C	615	619	anti-parallel
Strand 4	C	649	651	anti-parallel
Strand 5	C	638	641	anti-parallel
Strand 6	C	630	632	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	404	first strand
Strand 2	C	440	446	anti-parallel
Strand 3	C	568	576	anti-parallel
Strand 4	C	477	483	anti-parallel
Strand 5	C	419	426	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	409	first strand
Strand 2	C	585	586	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	515	first strand
Strand 2	C	497	506	anti-parallel
Strand 3	C	553	561	anti-parallel
Strand 4	C	539	544	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	723	724	first strand
Strand 2	C	757	762	parallel
Strand 3	C	735	739	anti-parallel
Strand 4	C	730	732	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	795	first strand
Strand 2	C	1134	1151	anti-parallel
Strand 3	C	1121	1129	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	804	first strand
Strand 2	C	932	934	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1202	1205	first strand
Strand 2	C	1164	1167	anti-parallel
Strand 3	C	1155	1157	anti-parallel
Strand 4	C	1212	1214	parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1170	1174	first strand
Strand 2	C	1184	1188	anti-parallel
Strand 3	C	1194	1195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMT