Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YMU entry

There are 3 chains in PDB entry 7YMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4SER 348
B
 ASN 5ALA 347
C
 ALA 4SER 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 7YMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
40 51Right-handed alpha
Helix 3
AA3
A
71 79Right-handed alpha
Helix 4
AA4
A
98 103Right-handed alpha
Helix 5
AA5
A
103 122Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
140 144Right-handed 310
Helix 8
AA8
A
162 166Right-handed 310
Helix 9
AA9
A
167 190Right-handed alpha
Helix 10
AB1
A
224 233Right-handed alpha
Helix 11
AB2
A
249 262Right-handed alpha
Helix 12
AB3
A
263 266Right-handed 310
Helix 13
AB4
A
279 290Right-handed alpha
Helix 14
AB5
A
291 294Right-handed 310
Helix 15
AB6
A
306 310Right-handed 310
Helix 16
AB7
A
316 324Right-handed alpha
Helix 17
AB8
A
329 348Right-handed alpha
Helix 18
AB9
B
17 30Right-handed alpha
Helix 19
AC1
B
40 51Right-handed alpha
Helix 20
AC2
B
71 79Right-handed alpha
Helix 21
AC3
B
98 103Right-handed alpha
Helix 22
AC4
B
103 123Right-handed alpha
Helix 23
AC5
B
134 138Right-handed 310
Helix 24
AC6
B
140 144Right-handed 310
Helix 25
AC7
B
162 166Right-handed 310
Helix 26
AC8
B
167 190Right-handed alpha
Helix 27
AC9
B
224 232Right-handed alpha
Helix 28
AD1
B
249 262Right-handed alpha
Helix 29
AD2
B
263 266Right-handed 310
Helix 30
AD3
B
279 290Right-handed alpha
Helix 31
AD4
B
291 294Right-handed 310
Helix 32
AD5
B
306 310Right-handed 310
Helix 33
AD6
B
316 324Right-handed alpha
Helix 34
AD7
B
329 347Right-handed alpha
Helix 35
AD8
C
4 7Right-handed 310
Helix 36
AD9
C
17 29Right-handed alpha
Helix 37
AE1
C
40 50Right-handed alpha
Helix 38
AE2
C
67 70Right-handed 310
Helix 39
AE3
C
71 79Right-handed alpha
Helix 40
AE4
C
98 103Right-handed alpha
Helix 41
AE5
C
103 122Right-handed alpha
Helix 42
AE6
C
134 138Right-handed 310
Helix 43
AE7
C
140 144Right-handed 310
Helix 44
AE8
C
162 166Right-handed 310
Helix 45
AE9
C
167 190Right-handed alpha
Helix 46
AF1
C
224 233Right-handed alpha
Helix 47
AF2
C
249 262Right-handed alpha
Helix 48
AF3
C
263 266Right-handed 310
Helix 49
AF4
C
279 290Right-handed alpha
Helix 50
AF5
C
291 294Right-handed 310
Helix 51
AF6
C
306 310Right-handed 310
Helix 52
AF7
C
316 324Right-handed alpha
Helix 53
AF8
C
329 346Right-handed alpha
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There are 6 sheets in PDB entry 7YMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
33 38parallel
Strand 3
A
9 13parallel
Strand 4
A
82 87parallel
Strand 5
A
128 132parallel
Strand 6
A
197 203parallel
Strand 7
A
269 272parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
243 248parallel
Strand 3
A
275 278anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
33 38parallel
Strand 3
B
9 13parallel
Strand 4
B
82 87parallel
Strand 5
B
128 132parallel
Strand 6
B
197 203parallel
Strand 7
B
269 272parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
243 248parallel
Strand 3
B
275 278anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
33 38parallel
Strand 3
C
9 13parallel
Strand 4
C
82 87parallel
Strand 5
C
128 132parallel
Strand 6
C
197 203parallel
Strand 7
C
269 272parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 207first strand
Strand 2
C
243 248parallel
Strand 3
C
275 278anti-parallel
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