Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YMV entry

There are 3 chains in PDB entry 7YMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 19	LEU 1223
B	VAL 19	LEU 1223
C	VAL 19	LEU 1223

There are 77 helices in PDB entry 7YMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	41	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	104	108	Right-handed 310
Helix 4	AA4	A	223	230	Right-handed alpha
Helix 5	AA5	A	342	351	Right-handed alpha
Helix 6	AA6	A	385	390	Right-handed alpha
Helix 7	AA7	A	395	399	Right-handed 310
Helix 8	AA8	A	414	418	Right-handed 310
Helix 9	AA9	A	452	457	Right-handed 310
Helix 10	AB1	A	462	468	Right-handed alpha
Helix 11	AB2	A	524	530	Right-handed alpha
Helix 12	AB3	A	546	550	Right-handed 310
Helix 13	AB4	A	591	595	Right-handed 310
Helix 14	AB5	A	596	600	Right-handed 310
Helix 15	AB6	A	805	812	Right-handed alpha
Helix 16	AB7	A	814	820	Right-handed alpha
Helix 17	AB8	A	825	853	Right-handed alpha
Helix 18	AB9	A	888	897	Right-handed alpha
Helix 19	AC1	A	907	915	Right-handed alpha
Helix 20	AC2	A	940	956	Right-handed alpha
Helix 21	AC3	A	971	983	Right-handed alpha
Helix 22	AC4	A	988	993	Right-handed alpha
Helix 23	AC5	A	993	1011	Right-handed alpha
Helix 24	AC6	A	1016	1037	Right-handed alpha
Helix 25	AC7	A	1050	1058	Right-handed alpha
Helix 26	AC8	A	1059	1106	Right-handed alpha
Helix 27	AC9	B	36	41	Right-handed alpha
Helix 28	AD1	B	218	221	Right-handed 310
Helix 29	AD2	B	222	231	Right-handed alpha
Helix 30	AD3	B	342	352	Right-handed alpha
Helix 31	AD4	B	395	399	Right-handed 310
Helix 32	AD5	B	410	415	Right-handed alpha
Helix 33	AD6	B	429	435	Right-handed 310
Helix 34	AD7	B	452	457	Right-handed 310
Helix 35	AD8	B	462	468	Right-handed alpha
Helix 36	AD9	B	524	529	Right-handed 310
Helix 37	AE1	B	546	550	Right-handed 310
Helix 38	AE2	B	596	600	Right-handed 310
Helix 39	AE3	B	805	811	Right-handed alpha
Helix 40	AE4	B	814	825	Right-handed alpha
Helix 41	AE5	B	826	854	Right-handed alpha
Helix 42	AE6	B	888	898	Right-handed alpha
Helix 43	AE7	B	907	915	Right-handed alpha
Helix 44	AE8	B	924	928	Right-handed 310
Helix 45	AE9	B	941	956	Right-handed alpha
Helix 46	AF1	B	971	982	Right-handed alpha
Helix 47	AF2	B	986	993	Right-handed alpha
Helix 48	AF3	B	993	1009	Right-handed alpha
Helix 49	AF4	B	1010	1012	Right-handed 310
Helix 50	AF5	B	1016	1038	Right-handed alpha
Helix 51	AF6	B	1050	1058	Right-handed alpha
Helix 52	AF7	B	1059	1106	Right-handed alpha
Helix 53	AF8	C	36	41	Right-handed alpha
Helix 54	AF9	C	49	53	Right-handed 310
Helix 55	AG1	C	218	221	Right-handed 310
Helix 56	AG2	C	222	230	Right-handed alpha
Helix 57	AG3	C	303	307	Right-handed 310
Helix 58	AG4	C	342	351	Right-handed alpha
Helix 59	AG5	C	411	416	Right-handed alpha
Helix 60	AG6	C	431	436	Right-handed alpha
Helix 61	AG7	C	452	457	Right-handed 310
Helix 62	AG8	C	462	468	Right-handed alpha
Helix 63	AG9	C	524	530	Right-handed alpha
Helix 64	AH1	C	546	550	Right-handed 310
Helix 65	AH2	C	595	600	Right-handed 310
Helix 66	AH3	C	805	811	Right-handed alpha
Helix 67	AH4	C	814	820	Right-handed alpha
Helix 68	AH5	C	826	854	Right-handed alpha
Helix 69	AH6	C	888	898	Right-handed alpha
Helix 70	AH7	C	908	915	Right-handed alpha
Helix 71	AH8	C	940	958	Right-handed alpha
Helix 72	AH9	C	971	983	Right-handed alpha
Helix 73	AI1	C	986	993	Right-handed alpha
Helix 74	AI2	C	993	1011	Right-handed alpha
Helix 75	AI3	C	1016	1042	Right-handed alpha
Helix 76	AI4	C	1051	1057	Right-handed alpha
Helix 77	AI5	C	1059	1106	Right-handed alpha

There are 55 sheets in PDB entry 7YMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	75	first strand
Strand 2	A	319	327	anti-parallel
Strand 3	A	333	338	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	299	300	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	96	97	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	168	174	anti-parallel
Strand 5	A	179	189	anti-parallel
Strand 6	A	232	235	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	284	first strand
Strand 2	A	262	266	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	115	120	anti-parallel
Strand 5	A	313	317	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	129	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	309	310	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	161	163	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	A	660	664	anti-parallel
Strand 3	A	669	675	anti-parallel
Strand 4	A	712	715	anti-parallel
Strand 5	A	707	708	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	404	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	568	576	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	419	426	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	552	562	anti-parallel
Strand 4	A	539	545	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	608	first strand
Strand 2	A	611	616	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	632	first strand
Strand 2	A	638	642	anti-parallel
Strand 3	A	648	650	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	724	first strand
Strand 2	A	757	762	parallel
Strand 3	A	735	739	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	769	first strand
Strand 2	B	857	858	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	795	first strand
Strand 2	A	1134	1151	anti-parallel
Strand 3	A	1121	1129	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	933	934	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	858	first strand
Strand 2	C	768	769	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1202	1205	first strand
Strand 2	A	1164	1167	anti-parallel
Strand 3	A	1155	1157	anti-parallel
Strand 4	A	1212	1214	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1170	1173	first strand
Strand 2	A	1185	1188	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	76	first strand
Strand 2	B	316	327	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	252	258	anti-parallel
Strand 5	B	263	267	anti-parallel
Strand 6	B	280	284	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	76	first strand
Strand 2	B	316	327	anti-parallel
Strand 3	B	333	338	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	312	313	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	96	97	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	292	295	anti-parallel
Strand 3	B	147	150	anti-parallel
Strand 4	B	168	174	anti-parallel
Strand 5	B	179	189	anti-parallel
Strand 6	B	232	235	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	137	139	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	161	163	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	298	300	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	659	664	anti-parallel
Strand 3	B	669	675	anti-parallel
Strand 4	B	712	715	anti-parallel
Strand 5	B	707	709	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	405	first strand
Strand 2	B	440	446	anti-parallel
Strand 3	B	568	576	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	419	426	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	515	first strand
Strand 2	B	497	506	anti-parallel
Strand 3	B	553	561	anti-parallel
Strand 4	B	539	544	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	604	first strand
Strand 2	B	615	618	anti-parallel
Strand 3	B	648	651	anti-parallel
Strand 4	B	640	642	anti-parallel
Strand 5	B	630	631	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	608	first strand
Strand 2	B	611	612	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	724	first strand
Strand 2	B	758	762	parallel
Strand 3	B	735	738	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	768	769	first strand
Strand 2	C	857	858	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	795	first strand
Strand 2	B	1134	1151	anti-parallel
Strand 3	B	1121	1129	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	802	803	first strand
Strand 2	B	933	934	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1164	1167	first strand
Strand 2	B	1202	1205	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1170	1174	first strand
Strand 2	B	1184	1188	anti-parallel
Strand 3	B	1195	1196	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	75	first strand
Strand 2	C	319	327	anti-parallel
Strand 3	C	333	338	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	312	317	anti-parallel
Strand 3	C	116	120	anti-parallel
Strand 4	C	252	259	anti-parallel
Strand 5	C	262	267	anti-parallel
Strand 6	C	279	284	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	96	97	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	292	296	anti-parallel
Strand 3	C	146	149	anti-parallel
Strand 4	C	167	174	anti-parallel
Strand 5	C	179	189	anti-parallel
Strand 6	C	232	241	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	309	310	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	161	164	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	362	first strand
Strand 2	C	659	664	anti-parallel
Strand 3	C	669	675	anti-parallel
Strand 4	C	712	715	anti-parallel
Strand 5	C	707	708	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	407	408	parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	404	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	568	576	anti-parallel
Strand 4	C	477	483	anti-parallel
Strand 5	C	419	426	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	515	first strand
Strand 2	C	496	506	anti-parallel
Strand 3	C	553	562	anti-parallel
Strand 4	C	539	544	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	604	first strand
Strand 2	C	615	619	anti-parallel
Strand 3	C	648	651	anti-parallel
Strand 4	C	638	642	anti-parallel
Strand 5	C	630	632	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	607	608	first strand
Strand 2	C	611	612	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	738	first strand
Strand 2	C	758	761	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	795	first strand
Strand 2	C	1133	1151	anti-parallel
Strand 3	C	1121	1130	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	795	first strand
Strand 2	C	1133	1151	anti-parallel
Strand 3	C	1170	1174	anti-parallel
Strand 4	C	1184	1188	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	803	first strand
Strand 2	C	933	934	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1202	1205	first strand
Strand 2	C	1164	1167	anti-parallel
Strand 3	C	1155	1156	anti-parallel
Strand 4	C	1212	1213	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMV