Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YMW entry

There are 3 chains in PDB entry 7YMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 19	LEU 1223
B	VAL 19	LEU 1223
C	VAL 19	LEU 1223

There are 78 helices in PDB entry 7YMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	108	Right-handed 310
Helix 2	AA2	A	222	229	Right-handed alpha
Helix 3	AA3	A	342	352	Right-handed alpha
Helix 4	AA4	A	385	390	Right-handed alpha
Helix 5	AA5	A	429	434	Right-handed 310
Helix 6	AA6	A	452	457	Right-handed 310
Helix 7	AA7	A	462	468	Right-handed alpha
Helix 8	AA8	A	524	530	Right-handed alpha
Helix 9	AA9	A	546	550	Right-handed 310
Helix 10	AB1	A	595	599	Right-handed 310
Helix 11	AB2	A	807	812	Right-handed alpha
Helix 12	AB3	A	814	821	Right-handed alpha
Helix 13	AB4	A	825	854	Right-handed alpha
Helix 14	AB5	A	888	898	Right-handed alpha
Helix 15	AB6	A	907	915	Right-handed alpha
Helix 16	AB7	A	924	928	Right-handed 310
Helix 17	AB8	A	940	956	Right-handed alpha
Helix 18	AB9	A	971	983	Right-handed alpha
Helix 19	AC1	A	986	992	Right-handed alpha
Helix 20	AC2	A	993	1012	Right-handed alpha
Helix 21	AC3	A	1016	1042	Right-handed alpha
Helix 22	AC4	A	1050	1058	Right-handed alpha
Helix 23	AC5	A	1059	1106	Right-handed alpha
Helix 24	AC6	A	1198	1200	Right-handed 310
Helix 25	AC7	A	1219	1223	Right-handed 310
Helix 26	AC8	B	104	108	Right-handed 310
Helix 27	AC9	B	218	221	Right-handed 310
Helix 28	AD1	B	222	230	Right-handed alpha
Helix 29	AD2	B	303	307	Right-handed 310
Helix 30	AD3	B	342	348	Right-handed alpha
Helix 31	AD4	B	385	390	Right-handed alpha
Helix 32	AD5	B	410	417	Right-handed alpha
Helix 33	AD6	B	449	457	Right-handed 310
Helix 34	AD7	B	462	468	Right-handed alpha
Helix 35	AD8	B	524	530	Right-handed alpha
Helix 36	AD9	B	546	550	Right-handed 310
Helix 37	AE1	B	591	595	Right-handed 310
Helix 38	AE2	B	596	600	Right-handed 310
Helix 39	AE3	B	814	822	Right-handed alpha
Helix 40	AE4	B	825	832	Right-handed alpha
Helix 41	AE5	B	834	853	Right-handed alpha
Helix 42	AE6	B	888	898	Right-handed alpha
Helix 43	AE7	B	907	915	Right-handed alpha
Helix 44	AE8	B	926	931	Right-handed alpha
Helix 45	AE9	B	940	959	Right-handed alpha
Helix 46	AF1	B	971	982	Right-handed alpha
Helix 47	AF2	B	987	992	Right-handed alpha
Helix 48	AF3	B	993	1011	Right-handed alpha
Helix 49	AF4	B	1016	1039	Right-handed alpha
Helix 50	AF5	B	1050	1057	Right-handed alpha
Helix 51	AF6	B	1059	1107	Right-handed alpha
Helix 52	AF7	B	1198	1200	Right-handed 310
Helix 53	AF8	C	104	108	Right-handed 310
Helix 54	AF9	C	218	221	Right-handed 310
Helix 55	AG1	C	222	230	Right-handed alpha
Helix 56	AG2	C	303	307	Right-handed 310
Helix 57	AG3	C	343	348	Right-handed alpha
Helix 58	AG4	C	385	390	Right-handed alpha
Helix 59	AG5	C	395	399	Right-handed 310
Helix 60	AG6	C	410	418	Right-handed 310
Helix 61	AG7	C	429	433	Right-handed 310
Helix 62	AG8	C	449	457	Right-handed 310
Helix 63	AG9	C	462	468	Right-handed alpha
Helix 64	AH1	C	546	550	Right-handed 310
Helix 65	AH2	C	596	600	Right-handed 310
Helix 66	AH3	C	814	822	Right-handed alpha
Helix 67	AH4	C	825	854	Right-handed alpha
Helix 68	AH5	C	889	898	Right-handed alpha
Helix 69	AH6	C	907	915	Right-handed alpha
Helix 70	AH7	C	940	959	Right-handed alpha
Helix 71	AH8	C	971	983	Right-handed alpha
Helix 72	AH9	C	986	993	Right-handed alpha
Helix 73	AI1	C	997	1011	Right-handed alpha
Helix 74	AI2	C	1016	1039	Right-handed alpha
Helix 75	AI3	C	1050	1057	Right-handed alpha
Helix 76	AI4	C	1059	1106	Right-handed alpha
Helix 77	AI5	C	1198	1200	Right-handed 310
Helix 78	AI6	C	1219	1223	Right-handed 310

There are 50 sheets in PDB entry 7YMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	75	first strand
Strand 2	A	319	327	anti-parallel
Strand 3	A	336	338	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	312	317	anti-parallel
Strand 3	A	116	120	anti-parallel
Strand 4	A	252	259	anti-parallel
Strand 5	A	262	267	anti-parallel
Strand 6	A	280	284	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	96	97	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	168	174	anti-parallel
Strand 5	A	179	189	anti-parallel
Strand 6	A	232	235	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	309	310	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	161	163	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	A	660	664	anti-parallel
Strand 3	A	669	675	anti-parallel
Strand 4	A	712	715	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	404	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	568	576	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	419	426	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	497	506	anti-parallel
Strand 3	A	553	561	anti-parallel
Strand 4	A	539	544	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	608	first strand
Strand 2	A	611	615	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	617	618	first strand
Strand 2	A	648	651	anti-parallel
Strand 3	A	640	642	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	724	first strand
Strand 2	A	761	762	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	780	first strand
Strand 2	A	1149	1152	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	796	first strand
Strand 2	A	1133	1146	anti-parallel
Strand 3	A	1121	1130	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	A	933	934	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	858	first strand
Strand 2	C	768	769	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1202	1205	first strand
Strand 2	A	1164	1167	anti-parallel
Strand 3	A	1155	1156	anti-parallel
Strand 4	A	1212	1213	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1170	1174	first strand
Strand 2	A	1184	1188	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	75	first strand
Strand 2	B	319	327	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	96	97	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	292	296	anti-parallel
Strand 3	B	146	150	anti-parallel
Strand 4	B	168	174	anti-parallel
Strand 5	B	179	189	anti-parallel
Strand 6	B	232	235	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	284	first strand
Strand 2	B	263	267	anti-parallel
Strand 3	B	252	258	anti-parallel
Strand 4	B	116	120	anti-parallel
Strand 5	B	315	317	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	309	310	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	362	first strand
Strand 2	B	660	664	anti-parallel
Strand 3	B	669	675	anti-parallel
Strand 4	B	712	714	anti-parallel
Strand 5	B	707	709	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	604	608	parallel
Strand 3	B	611	615	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	404	first strand
Strand 2	B	440	446	anti-parallel
Strand 3	B	568	576	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	419	426	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	514	first strand
Strand 2	B	497	506	anti-parallel
Strand 3	B	553	561	anti-parallel
Strand 4	B	539	544	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	617	618	first strand
Strand 2	B	649	651	anti-parallel
Strand 3	B	638	641	anti-parallel
Strand 4	B	630	632	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	732	first strand
Strand 2	B	735	738	anti-parallel
Strand 3	B	758	759	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	768	769	first strand
Strand 2	C	857	858	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	783	first strand
Strand 2	B	1146	1151	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	795	first strand
Strand 2	B	1134	1141	anti-parallel
Strand 3	B	1121	1129	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	802	804	first strand
Strand 2	B	932	934	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1155	1156	first strand
Strand 2	B	1164	1167	anti-parallel
Strand 3	B	1202	1205	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1170	1172	first strand
Strand 2	B	1186	1188	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	75	first strand
Strand 2	C	319	327	anti-parallel
Strand 3	C	333	337	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	292	296	anti-parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	168	174	anti-parallel
Strand 5	C	179	188	anti-parallel
Strand 6	C	233	235	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	284	first strand
Strand 2	C	262	267	anti-parallel
Strand 3	C	252	259	anti-parallel
Strand 4	C	116	120	anti-parallel
Strand 5	C	314	317	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	129	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	309	310	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	161	163	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	604	608	parallel
Strand 3	C	611	615	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	404	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	568	576	anti-parallel
Strand 4	C	477	483	anti-parallel
Strand 5	C	419	426	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	515	first strand
Strand 2	C	497	506	anti-parallel
Strand 3	C	553	561	anti-parallel
Strand 4	C	539	544	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	620	first strand
Strand 2	C	648	650	anti-parallel
Strand 3	C	638	642	anti-parallel
Strand 4	C	631	632	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	664	first strand
Strand 2	C	669	675	anti-parallel
Strand 3	C	712	715	anti-parallel
Strand 4	C	707	709	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	723	724	first strand
Strand 2	C	760	762	parallel
Strand 3	C	735	736	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	795	first strand
Strand 2	C	1133	1151	anti-parallel
Strand 3	C	1121	1130	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	804	first strand
Strand 2	C	932	935	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1155	1156	first strand
Strand 2	C	1164	1167	anti-parallel
Strand 3	C	1202	1203	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1170	1174	first strand
Strand 2	C	1184	1188	anti-parallel
Strand 3	C	1195	1196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMW