Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YMY entry

There are 3 chains in PDB entry 7YMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 19	LEU 1223
B	VAL 19	LEU 1223
C	VAL 19	LEU 1223

There are 81 helices in PDB entry 7YMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	41	Right-handed alpha
Helix 2	AA2	A	209	214	Right-handed alpha
Helix 3	AA3	A	218	221	Right-handed 310
Helix 4	AA4	A	222	230	Right-handed alpha
Helix 5	AA5	A	303	307	Right-handed 310
Helix 6	AA6	A	342	352	Right-handed alpha
Helix 7	AA7	A	385	390	Right-handed alpha
Helix 8	AA8	A	410	418	Right-handed 310
Helix 9	AA9	A	430	434	Right-handed 310
Helix 10	AB1	A	449	457	Right-handed 310
Helix 11	AB2	A	462	468	Right-handed alpha
Helix 12	AB3	A	524	530	Right-handed alpha
Helix 13	AB4	A	596	600	Right-handed 310
Helix 14	AB5	A	805	812	Right-handed alpha
Helix 15	AB6	A	814	822	Right-handed alpha
Helix 16	AB7	A	825	854	Right-handed alpha
Helix 17	AB8	A	888	896	Right-handed alpha
Helix 18	AB9	A	907	913	Right-handed alpha
Helix 19	AC1	A	940	959	Right-handed alpha
Helix 20	AC2	A	971	983	Right-handed alpha
Helix 21	AC3	A	986	993	Right-handed alpha
Helix 22	AC4	A	993	1011	Right-handed alpha
Helix 23	AC5	A	1016	1039	Right-handed alpha
Helix 24	AC6	A	1050	1058	Right-handed alpha
Helix 25	AC7	A	1059	1106	Right-handed alpha
Helix 26	AC8	A	1198	1200	Right-handed 310
Helix 27	AC9	B	36	41	Right-handed alpha
Helix 28	AD1	B	218	221	Right-handed 310
Helix 29	AD2	B	222	230	Right-handed alpha
Helix 30	AD3	B	268	273	Right-handed alpha
Helix 31	AD4	B	303	307	Right-handed 310
Helix 32	AD5	B	342	351	Right-handed alpha
Helix 33	AD6	B	385	390	Right-handed alpha
Helix 34	AD7	B	395	399	Right-handed 310
Helix 35	AD8	B	410	414	Right-handed 310
Helix 36	AD9	B	429	436	Right-handed alpha
Helix 37	AE1	B	452	457	Right-handed 310
Helix 38	AE2	B	463	468	Right-handed alpha
Helix 39	AE3	B	524	530	Right-handed alpha
Helix 40	AE4	B	596	600	Right-handed 310
Helix 41	AE5	B	805	812	Right-handed alpha
Helix 42	AE6	B	814	822	Right-handed alpha
Helix 43	AE7	B	823	825	Right-handed 310
Helix 44	AE8	B	826	854	Right-handed alpha
Helix 45	AE9	B	888	898	Right-handed alpha
Helix 46	AF1	B	908	915	Right-handed alpha
Helix 47	AF2	B	924	930	Right-handed 310
Helix 48	AF3	B	940	959	Right-handed alpha
Helix 49	AF4	B	971	982	Right-handed alpha
Helix 50	AF5	B	986	993	Right-handed alpha
Helix 51	AF6	B	993	1008	Right-handed alpha
Helix 52	AF7	B	1016	1039	Right-handed alpha
Helix 53	AF8	B	1050	1056	Right-handed alpha
Helix 54	AF9	B	1059	1106	Right-handed alpha
Helix 55	AG1	C	36	41	Right-handed alpha
Helix 56	AG2	C	104	108	Right-handed 310
Helix 57	AG3	C	209	214	Right-handed alpha
Helix 58	AG4	C	222	229	Right-handed alpha
Helix 59	AG5	C	342	350	Right-handed alpha
Helix 60	AG6	C	385	390	Right-handed alpha
Helix 61	AG7	C	410	414	Right-handed 310
Helix 62	AG8	C	449	457	Right-handed 310
Helix 63	AG9	C	462	468	Right-handed alpha
Helix 64	AH1	C	524	529	Right-handed 310
Helix 65	AH2	C	546	550	Right-handed 310
Helix 66	AH3	C	591	595	Right-handed 310
Helix 67	AH4	C	596	600	Right-handed 310
Helix 68	AH5	C	806	811	Right-handed alpha
Helix 69	AH6	C	814	825	Right-handed alpha
Helix 70	AH7	C	825	854	Right-handed alpha
Helix 71	AH8	C	871	875	Right-handed 310
Helix 72	AH9	C	888	898	Right-handed alpha
Helix 73	AI1	C	909	914	Right-handed alpha
Helix 74	AI2	C	940	956	Right-handed alpha
Helix 75	AI3	C	971	984	Right-handed alpha
Helix 76	AI4	C	986	993	Right-handed alpha
Helix 77	AI5	C	993	1011	Right-handed alpha
Helix 78	AI6	C	1016	1038	Right-handed alpha
Helix 79	AI7	C	1039	1041	Right-handed 310
Helix 80	AI8	C	1050	1058	Right-handed alpha
Helix 81	AI9	C	1059	1106	Right-handed alpha

There are 54 sheets in PDB entry 7YMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	75	first strand
Strand 2	A	319	327	anti-parallel
Strand 3	A	333	337	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	299	300	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	146	150	anti-parallel
Strand 4	A	167	174	anti-parallel
Strand 5	A	179	189	anti-parallel
Strand 6	A	232	235	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	284	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	116	120	anti-parallel
Strand 5	A	314	317	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	309	310	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	161	165	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	603	608	parallel
Strand 3	A	611	612	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	603	608	parallel
Strand 3	A	615	620	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	638	642	anti-parallel
Strand 6	A	630	632	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	404	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	568	576	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	419	424	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	497	506	anti-parallel
Strand 3	A	553	561	anti-parallel
Strand 4	A	539	544	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	669	675	anti-parallel
Strand 3	A	712	715	anti-parallel
Strand 4	A	707	709	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	724	first strand
Strand 2	A	758	762	parallel
Strand 3	A	735	738	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	769	first strand
Strand 2	B	857	858	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	782	first strand
Strand 2	A	1147	1152	anti-parallel
Strand 3	A	1171	1174	anti-parallel
Strand 4	A	1184	1187	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	795	first strand
Strand 2	A	1133	1144	anti-parallel
Strand 3	A	1121	1130	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	804	first strand
Strand 2	A	932	934	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	858	first strand
Strand 2	C	768	769	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1155	1157	first strand
Strand 2	A	1212	1214	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1164	1167	first strand
Strand 2	A	1202	1205	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	75	first strand
Strand 2	B	319	327	anti-parallel
Strand 3	B	333	338	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	312	317	anti-parallel
Strand 3	B	115	120	anti-parallel
Strand 4	B	252	259	anti-parallel
Strand 5	B	262	266	anti-parallel
Strand 6	B	280	284	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	96	97	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	292	296	anti-parallel
Strand 3	B	146	150	anti-parallel
Strand 4	B	168	174	anti-parallel
Strand 5	B	179	189	anti-parallel
Strand 6	B	232	235	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	129	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	309	310	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	161	163	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	299	300	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	362	first strand
Strand 2	B	659	664	anti-parallel
Strand 3	B	669	675	anti-parallel
Strand 4	B	712	715	anti-parallel
Strand 5	B	707	709	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	603	607	parallel
Strand 3	B	612	619	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	638	642	anti-parallel
Strand 6	B	631	632	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	404	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	568	576	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	422	426	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	409	first strand
Strand 2	B	584	586	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	515	first strand
Strand 2	B	497	506	anti-parallel
Strand 3	B	553	561	anti-parallel
Strand 4	B	539	544	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	724	first strand
Strand 2	B	757	762	parallel
Strand 3	B	735	738	anti-parallel
Strand 4	B	730	732	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	768	769	first strand
Strand 2	C	857	858	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	795	first strand
Strand 2	B	1133	1151	anti-parallel
Strand 3	B	1122	1130	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	802	804	first strand
Strand 2	B	932	934	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1164	1167	first strand
Strand 2	B	1202	1205	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1170	1174	first strand
Strand 2	B	1184	1188	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	75	first strand
Strand 2	C	319	327	anti-parallel
Strand 3	C	333	338	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	312	317	anti-parallel
Strand 3	C	116	120	anti-parallel
Strand 4	C	252	259	anti-parallel
Strand 5	C	262	267	anti-parallel
Strand 6	C	279	284	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	96	97	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	292	296	anti-parallel
Strand 3	C	146	150	anti-parallel
Strand 4	C	168	174	anti-parallel
Strand 5	C	179	185	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	129	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	309	310	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	161	165	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	659	664	anti-parallel
Strand 3	C	669	675	anti-parallel
Strand 4	C	712	715	anti-parallel
Strand 5	C	708	709	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	604	608	parallel
Strand 3	C	611	615	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	568	576	anti-parallel
Strand 4	C	477	483	anti-parallel
Strand 5	C	419	426	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	409	first strand
Strand 2	C	585	586	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	514	first strand
Strand 2	C	497	506	anti-parallel
Strand 3	C	553	561	anti-parallel
Strand 4	C	539	544	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	620	first strand
Strand 2	C	648	650	anti-parallel
Strand 3	C	638	642	anti-parallel
Strand 4	C	630	632	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	724	first strand
Strand 2	C	758	762	parallel
Strand 3	C	735	738	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	782	first strand
Strand 2	C	1147	1151	anti-parallel
Strand 3	C	1170	1174	anti-parallel
Strand 4	C	1184	1188	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	785	796	first strand
Strand 2	C	1133	1144	anti-parallel
Strand 3	C	1121	1130	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	804	first strand
Strand 2	C	932	934	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1155	1156	first strand
Strand 2	C	1164	1167	anti-parallel
Strand 3	C	1202	1205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YMY