Analysis of interatomic Contacts of Structural Units in PDB entry:
7YNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YNI entry

There are 2 chains in PDB entry 7YNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19ALA 664
B
 LEU 27TRP 54
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 7YNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 24Right-handed 310
Helix 2
AA2
A
25 48Right-handed alpha
Helix 3
AA3
A
66 79Right-handed alpha
Helix 4
AA4
A
80 94Right-handed alpha
Helix 5
AA5
A
96 115Right-handed alpha
Helix 6
AA6
A
116 123Right-handed alpha
Helix 7
AA7
A
127 137Right-handed alpha
Helix 8
AA8
A
139 173Right-handed alpha
Helix 9
AA9
A
176 193Right-handed alpha
Helix 10
AB1
A
201 227Right-handed alpha
Helix 11
AB2
A
227 237Right-handed alpha
Helix 12
AB3
A
252 257Right-handed alpha
Helix 13
AB4
A
275 293Right-handed alpha
Helix 14
AB5
A
294 303Right-handed alpha
Helix 15
AB6
A
306 322Right-handed alpha
Helix 16
AB7
A
323 339Right-handed alpha
Helix 17
AB8
A
339 344Right-handed alpha
Helix 18
AB9
A
347 356Right-handed alpha
Helix 19
AC1
A
361 363Right-handed 310
Helix 20
AC2
A
364 373Right-handed alpha
Helix 21
AC3
A
375 409Right-handed alpha
Helix 22
AC4
A
409 414Right-handed alpha
Helix 23
AC5
A
418 445Right-handed alpha
Helix 24
AC6
A
451 464Right-handed alpha
Helix 25
AC7
A
464 477Right-handed alpha
Helix 26
AC8
A
481 507Right-handed alpha
Helix 27
AC9
A
518 523Right-handed alpha
Helix 28
AD1
A
525 548Right-handed alpha
Helix 29
AD2
A
628 633Right-handed alpha
Helix 30
AD3
A
638 663Right-handed alpha
Helix 31
AD4
B
28 54Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 7YNI.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
249 250anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il