Analysis of interatomic Contacts of Structural Units in PDB entry:
7YNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YNJ entry

There are 2 chains in PDB entry 7YNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 26ALA 672
B
 GLN 28CYS 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7YNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 46Right-handed alpha
Helix 2
AA2
A
63 76Right-handed alpha
Helix 3
AA3
A
77 91Right-handed alpha
Helix 4
AA4
A
92 94Right-handed 310
Helix 5
AA5
A
95 112Right-handed alpha
Helix 6
AA6
A
112 120Right-handed alpha
Helix 7
AA7
A
124 133Right-handed alpha
Helix 8
AA8
A
135 152Right-handed alpha
Helix 9
AA9
A
154 171Right-handed alpha
Helix 10
AB1
A
173 192Right-handed alpha
Helix 11
AB2
A
200 224Right-handed alpha
Helix 12
AB3
A
225 231Right-handed alpha
Helix 13
AB4
A
275 281Right-handed alpha
Helix 14
AB5
A
281 291Right-handed alpha
Helix 15
AB6
A
294 302Right-handed alpha
Helix 16
AB7
A
306 323Right-handed alpha
Helix 17
AB8
A
323 339Right-handed alpha
Helix 18
AB9
A
339 344Right-handed alpha
Helix 19
AC1
A
347 356Right-handed alpha
Helix 20
AC2
A
364 373Right-handed alpha
Helix 21
AC3
A
380 406Right-handed alpha
Helix 22
AC4
A
407 414Right-handed alpha
Helix 23
AC5
A
418 446Right-handed alpha
Helix 24
AC6
A
447 450Right-handed 310
Helix 25
AC7
A
451 477Right-handed alpha
Helix 26
AC8
A
481 507Right-handed alpha
Helix 27
AC9
A
518 523Right-handed alpha
Helix 28
AD1
A
525 547Right-handed alpha
Helix 29
AD2
A
552 556Right-handed 310
Helix 30
AD3
A
560 564Right-handed 310
Helix 31
AD4
A
646 671Right-handed alpha
Helix 32
AD5
B
29 55Right-handed alpha
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There are no sheets in PDB entry 7YNJ
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